Protein profile

VK055_2742

PLD-like domain protein

Genome: KpATCC43816

Gene: AIK81332.1 Structure source: ColabFold
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Amino acids 449
Annotations 0
Features 6
PDB binders 0
Druggability 0.604

Overview

Basic information about this protein and its source genome.

Accession
VK055_2742
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK81332.1
Status
annotated
Amino acids
449
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
No hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
93.57

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.604
Structure CB_VK055_2742
Pocket Pocket 2
P2Rank 0.73
Structure CB_VK055_2742
Pocket Pocket 1
ColabFold model
FPocket 0.604 · Pocket 2
P2Rank 0.73 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 0 / 4744 genomes with a hit
Normalized 0

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

6 records
Show feature table
Start End DB Term Name
45 144 SUPERFAMILY SSF56024 Phospholipase D/nuclease
65 143 Pfam PF13091 PLD-like domain
65 143 InterPro IPR025202 Phospholipase D-like domain
156 176 Coils Coil Coil
88 120 CDD cd00138 PLDc_SF
37 165 Gene3D G3DSA:3.30.870.10 Endonuclease Chain A

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_2742
ColabFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.192
5 0.004
8 0.002
23 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 17.55 0.73
2 9.09 0.418
3 3.82 0.12
4 1.78 0.028
5 1.37 0.014