Protein profile

VK055_2754

smpA / OmlA family protein

Genome: KpATCC43816

Gene: AIK81344.1 Structure source: ColabFold
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Amino acids 105
Annotations 1
Features 4
PDB binders 0
Druggability 0.174

Overview

Basic information about this protein and its source genome.

Accession
VK055_2754
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK81344.1
Status
annotated
Amino acids
105
Structure source
ColabFold
GO
GO:0019867 The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
82.21

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.174
Structure CB_VK055_2754
Pocket Pocket 5
P2Rank
Structure CB_VK055_2754
Pocket No pockets
ColabFold model
FPocket 0.174 · Pocket 5
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 5 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0019867 The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Sequence Features

Domain/signature hits from InterPro and related databases.

4 records
Show feature table
Start End DB Term Name
8 102 Gene3D G3DSA:3.30.1450.10 -
8 102 InterPro IPR037873 BamE-like
17 90 Pfam PF04355 SmpA / OmlA family
17 90 InterPro IPR007450 Lipoprotein SmpA/OmlA

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

No pockets are loaded yet for the displayed ColabFold model VK055_2754 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_2754
ColabFold — — full sequence — Viewing