Protein profile

VK055_3293

GTP-binding protein TypA/BipA

Genome: KpATCC43816

Gene: typA AIK81854.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GLB7
Amino acids 607
Annotations 12
Features 55
PDB binders 8
Druggability 0.317

Overview

Basic information about this protein and its source genome.

Accession
VK055_3293
Gene
typA AIK81854.1
Status
annotated
Amino acids
607
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
58.333
Human E-value
9.89e-12
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
54.139
DEG E-value
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
88.75

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.317
Structure A0A0H3GLB7
Pocket Pocket 24
P2Rank 0.783
Structure A0A0H3GLB7
Pocket Pocket 1
ColabFold model
FPocket 0.688 · Pocket 1
P2Rank 0.751 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 3019 / 4744 genomes with a hit
Normalized 0.636

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 11 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

11
  • GO:0005525 Binding to GTP, guanosine triphosphate.
  • GO:0003924 Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:1990904 A macromolecular complex that contains both RNA and protein molecules.
  • GO:0097216 Binding to guanosine tetraphosphate (5'-ppGpp-3'), a guanosine bisphosphate having diphosphate groups at both the 3' and 5'-positions.
  • GO:0043022 Binding to a ribosome.
  • GO:0019843 Binding to a ribosomal RNA.
  • GO:0000049 Binding to a transfer RNA.
  • GO:0010467 The process in which a gene's sequence is converted into a mature gene product (protein or RNA). This includes the production of an RNA transcript and its processing, as well as translation and maturation for protein-coding genes.
  • GO:0009409 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
  • GO:0000027 The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.

Sequence Features

Domain/signature hits from InterPro and related databases.

55 records
Show feature table
Start End DB Term Name
389 482 Gene3D G3DSA:3.30.70.240 -
1 198 Gene3D G3DSA:3.40.50.300 -
1 198 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
3 173 PANTHER PTHR42908 TRANSLATION ELONGATION FACTOR-RELATED
44 59 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.
44 59 InterPro IPR031157 Tr-type G domain, conserved site
219 289 Pfam PF03144 Elongation factor Tu domain 2
219 289 InterPro IPR004161 Translation elongation factor EFTu-like, domain 2
305 383 CDD cd16263 BipA_III
305 383 InterPro IPR047043 GTP-binding protein BipA, domain 3
1 198 FunFam G3DSA:3.40.50.300:FF:000055 GTP-binding protein TypA
199 299 FunFam G3DSA:2.40.30.10:FF:000016 GTP-binding protein TypA
5 134 NCBIfam TIGR00231 small GTP-binding protein domain
5 134 InterPro IPR005225 Small GTP-binding protein domain
3 601 Hamap MF_00849 50S ribosomal subunit assembly factor BipA [bipA].
3 601 InterPro IPR006298 GTP-binding protein BipA
397 476 Pfam PF00679 Elongation factor G C-terminus
397 476 InterPro IPR000640 Elongation factor EFG, domain V-like
306 590 Gene3D G3DSA:3.30.70.870 Elongation Factor G (Translational Gtpase), domain 3
87 98 PRINTS PR00315 GTP-binding elongation factor signature
87 98 InterPro IPR000795 Translational (tr)-type GTP-binding domain
123 132 PRINTS PR00315 GTP-binding elongation factor signature
123 132 InterPro IPR000795 Translational (tr)-type GTP-binding domain
71 81 PRINTS PR00315 GTP-binding elongation factor signature
71 81 InterPro IPR000795 Translational (tr)-type GTP-binding domain
51 59 PRINTS PR00315 GTP-binding elongation factor signature
51 59 InterPro IPR000795 Translational (tr)-type GTP-binding domain
7 20 PRINTS PR00315 GTP-binding elongation factor signature
7 20 InterPro IPR000795 Translational (tr)-type GTP-binding domain
302 387 SUPERFAMILY SSF54980 EF-G C-terminal domain-like
302 387 InterPro IPR035647 EF-G domain III/V-like
205 298 CDD cd03691 BipA_TypA_II
205 298 InterPro IPR047042 GTP-binding protein BipA, domain 2
4 197 CDD cd01891 TypA_BipA
4 197 InterPro IPR047041 GTP-binding protein BipA, GTP-binding domain
389 482 FunFam G3DSA:3.30.70.240:FF:000002 GTP-binding protein TypA
151 299 SUPERFAMILY SSF50447 Translation proteins
151 299 InterPro IPR009000 Translation protein, beta-barrel domain superfamily
4 195 Pfam PF00009 Elongation factor Tu GTP binding domain
4 195 InterPro IPR000795 Translational (tr)-type GTP-binding domain
398 512 SUPERFAMILY SSF54980 EF-G C-terminal domain-like
398 512 InterPro IPR035647 EF-G domain III/V-like
483 599 Gene3D G3DSA:2.40.50.250 bipa protein
483 599 InterPro IPR042116 GTP-binding protein TypA/BipA, C-terminal
5 599 NCBIfam TIGR01394 translational GTPase TypA/BipA
5 599 InterPro IPR006298 GTP-binding protein BipA
306 404 FunFam G3DSA:3.30.70.870:FF:000003 GTP-binding protein TypA
483 570 FunFam G3DSA:2.40.50.250:FF:000001 GTP-binding protein TypA
398 476 CDD cd03710 BipA_TypA_C
398 476 InterPro IPR035651 BipA, domain V
2 207 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
2 207 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
3 198 ProSiteProfiles PS51722 Translational (tr)-type guanine nucleotide-binding (G) domain profile.
3 198 InterPro IPR000795 Translational (tr)-type GTP-binding domain
199 299 Gene3D G3DSA:2.40.30.10 Translation factors

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GLB7
AlphaFold full sequence Viewing
ColabFold VK055_3293
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
43 0.214
25 0.015
28 0.002
13 0.001

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 19.82 0.783
2 16.37 0.699
3 3.86 0.122
4 3.38 0.096
5 3.17 0.086

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

58 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5MU Q5SKA7 338.2 Da LogP -2.43 TPSA 171.3 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
APR P32324 559.3 Da LogP -3.28 TPSA 291.5 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
G4P P0A3B2 603.2 Da LogP -2.22 TPSA 345.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O…
GCP P0A3B2 521.2 Da LogP -2.22 TPSA 289.9 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O…
GNP O67618 522.2 Da LogP -2.76 TPSA 301.9 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O…
MOU P32324 690.8 Da LogP 4.50 TPSA 175.1 1 viol. ✓ Clean C[C@@H]1CC[C@@H]2[C@@H]1C[C@@]3([C@@H]4C[C@]2([…
SO1 P32324 494.6 Da LogP 2.49 TPSA 122.5 ✓ Ro5 ✓ Clean C[C@@H]1CC[C@@H]2[C@@H]1C[C@@]3([C@H]4CC([C@@]3…
SOD P32324 519.1 Da LogP 4.85 TPSA 82.1 1 viol. ✓ Clean C[C@@H]1[C@@H](C[C@@H]2[C@@H]1C[C@@]3([C@@H]4C[…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.