Protein profile

VK055_3489

dut

Genome: KpATCC43816

Gene: dut AIK82045.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3H054
Amino acids 151
Annotations 5
Features 15
PDB binders 1
Druggability 0.387

Overview

Basic information about this protein and its source genome.

Accession
VK055_3489
Gene
dut AIK82045.1
Status
annotated
Amino acids
151
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
37.805
Human E-value
1.63e-10
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
94.702
DEG E-value
2.37e-105
Localization
Unknown
ColabFold pLDDT
96.03

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.387
Structure A0A0H3H054
Pocket Pocket 9
P2Rank 0.126
Structure A0A0H3H054
Pocket Pocket 1
ColabFold model
FPocket 0.629 · Pocket 1
P2Rank 0.06 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 331 / 4744 genomes with a hit
Normalized 0.07

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0046081 The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
  • GO:0006226 The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
  • GO:0000287 Binding to a magnesium (Mg) ion.
  • GO:0004170 Catalysis of the reaction: dUTP + H2O = dUMP + H+ + diphosphate.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
1 151 FunFam G3DSA:2.70.40.10:FF:000002 dUTP diphosphatase
16 149 Pfam PF00692 dUTPase
16 149 InterPro IPR029054 dUTPase-like
11 149 PANTHER PTHR11241 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
11 149 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase
28 121 CDD cd07557 trimeric_dUTPase
28 121 InterPro IPR033704 dUTPase, trimeric
6 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut].
6 150 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase
10 150 NCBIfam TIGR00576 dUTP diphosphatase
10 150 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase
1 150 SUPERFAMILY SSF51283 dUTPase-like
1 150 InterPro IPR036157 dUTPase-like superfamily
1 151 Gene3D G3DSA:2.70.40.10 -
1 151 InterPro IPR036157 dUTPase-like superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H054
AlphaFold full sequence Viewing
ColabFold VK055_3489
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
9 0.387
11 0.057
8 0.0
10 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 3.93 0.126
2 2.78 0.069

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

151 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
DUP P06968 467.2 Da LogP -1.90 TPSA 246.9 1 viol. ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.