Protein profile

VK055_3980

hypothetical protein

Genome: KpATCC43816

Gene: AIK82528.1 Structure source: Experimental + ColabFold UniProt Q48422
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Amino acids 142
Annotations 0
Features 7
PDB binders 0
Druggability 0.448

Overview

Basic information about this protein and its source genome.

Accession
VK055_3980
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK82528.1
Status
annotated
Amino acids
142
Structure source
Experimental + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
98.52

Selected Druggability evidence

PDB experimental structure

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.448
Structure 2A2L
Pocket Pocket 4
P2Rank 0.08
Structure 2A2L
Pocket Pocket 1
ColabFold model
FPocket 0.42 · Pocket 5
P2Rank 0.029 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 29 / 4744 genomes with a hit
Normalized 0.006

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

7 records
Show feature table
Start End DB Term Name
3 136 PANTHER PTHR34309 SLR1406 PROTEIN
1 142 Gene3D G3DSA:3.30.450.150 -
1 142 InterPro IPR038084 Corrinoid adenosyltransferase PduO/GlcC-like superfamily
10 136 Pfam PF03928 Haem degrading protein HbpS-like
10 136 InterPro IPR005624 Corrinoid adenosyltransferase PduO/GlcC-like
3 139 SUPERFAMILY SSF143744 GlcG-like
3 139 InterPro IPR038084 Corrinoid adenosyltransferase PduO/GlcC-like superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 2A2L
X-ray 2.20 Å A,B,C,D
99.3% 2-142
PDBe RCSB PDBj File
Viewing
ColabFold VK055_3980
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.549
3 0.473
17 0.47
28 0.251

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 13.67 0.695
2 11.13 0.597
3 9.86 0.53
4 8.88 0.475
5 8.73 0.467