Protein profile

VK055_4177

evgS-Phis

Genome: KpATCC43816

Gene: AIK82722.1 evgS2 Structure source: AlphaFold + ColabFold UniProt A0A483MVK4
Amino acids 1214
Annotations 9
Features 79
PDB binders 3
Druggability 0.734

Overview

Basic information about this protein and its source genome.

Accession
VK055_4177
Gene
AIK82722.1 evgS2
Status
annotated
Amino acids
1214
Structure source
AlphaFold + ColabFold
GO
GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
43.49
DEG E-value
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
79.09

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.734
Structure A0A483MVK4
Pocket Pocket 1
P2Rank 0.935
Structure A0A483MVK4
Pocket Pocket 1
ColabFold model
FPocket 0.747 · Pocket 10
P2Rank 0.895 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 3 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 8 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

8
  • GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
  • GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
  • GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
  • GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
  • GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0009927 Serves as a phospho-His intermediate enabling the transfer of phospho group between a hybrid kinase and a response regulator.

Sequence Features

Domain/signature hits from InterPro and related databases.

79 records
Show feature table
Start End DB Term Name
60 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3
60 272 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
297 515 CDD cd13707 PBP2_BvgS_D2
1 17 Phobius SIGNAL_PEPTIDE Signal peptide region
957 1065 CDD cd17546 REC_hyHK_CKI1_RcsC-like
707 773 Pfam PF00512 His Kinase A (phospho-acceptor) domain
707 773 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
290 514 Gene3D G3DSA:3.40.190.10 -
705 769 CDD cd00082 HisKA
705 769 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
50 272 CDD cd13705 PBP2_BvgS_D1
54 273 SUPERFAMILY SSF53850 Periplasmic binding protein-like II
684 704 Coils Coil Coil
1212 1214 Coils Coil Coil
956 1070 ProSiteProfiles PS50110 Response regulatory domain profile.
956 1070 InterPro IPR001789 Signal transduction response regulator, receiver domain
18 531 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
697 773 Gene3D G3DSA:1.10.287.130 -
52 275 SMART SM00062 AABind_6
52 275 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
299 518 SMART SM00062 AABind_6
299 518 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
825 931 CDD cd16922 HATPase_EvgS-ArcB-TorS-like
714 934 ProSiteProfiles PS50109 Histidine kinase domain profile.
714 934 InterPro IPR005467 Histidine kinase domain
300 517 SUPERFAMILY SSF53850 Periplasmic binding protein-like II
1095 1208 Gene3D G3DSA:1.20.120.160 HPT domain
1095 1208 InterPro IPR036641 HPT domain superfamily
532 554 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
821 931 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
821 931 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
953 1078 SUPERFAMILY SSF52172 CheY-like
953 1078 InterPro IPR011006 CheY-like superfamily
1049 1180 SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain
1049 1180 InterPro IPR036641 HPT domain superfamily
2 12 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
385 477 Gene3D G3DSA:3.40.190.10 -
707 773 SMART SM00388 HisKA_10
772 936 FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC
555 1214 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
532 554 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
894 912 PRINTS PR00344 Bacterial sensor protein C-terminal signature
894 912 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
879 889 PRINTS PR00344 Bacterial sensor protein C-terminal signature
879 889 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
918 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature
918 931 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
861 875 PRINTS PR00344 Bacterial sensor protein C-terminal signature
861 875 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
1 16 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
774 939 Gene3D G3DSA:3.30.565.10 -
774 939 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
301 514 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3
301 514 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
556 696 Gene3D G3DSA:3.30.450.20 PAS domain
1122 1197 Pfam PF01627 Hpt domain
1122 1197 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
139 234 Gene3D G3DSA:3.40.190.10 -
490 1067 PANTHER PTHR43047 TWO-COMPONENT HISTIDINE PROTEIN KINASE
659 681 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
557 685 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
557 685 InterPro IPR035965 PAS domain superfamily
1110 1204 ProSiteProfiles PS50894 Histidine-containing phosphotransfer (HPt) domain profile.
1110 1204 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
955 1066 SMART SM00448 REC_2
955 1066 InterPro IPR001789 Signal transduction response regulator, receiver domain
690 774 SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase
690 774 InterPro IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily
820 934 SMART SM00387 HKATPase_4
820 934 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
42 271 Gene3D G3DSA:3.40.190.10 -
940 1082 Gene3D G3DSA:3.40.50.2300 -
957 1066 Pfam PF00072 Response regulator receiver domain
957 1066 InterPro IPR001789 Signal transduction response regulator, receiver domain
13 17 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
1 17 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
763 930 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
763 930 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483MVK4
AlphaFold full sequence Viewing
ColabFold VK055_4177
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.734
3 0.281
6 0.233

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 22.95 0.885
2 7.92 0.421
3 5.87 0.287
4 2.75 0.083
5 2.6 0.075

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

53 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ANP P0AE82 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BEF O22267 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
BTB P0AEC6 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.