Protein profile

VK055_4282

putative lipoprotein

Genome: KpATCC43816

Gene: AIK82827.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3H2C2
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Amino acids 72
Annotations 0
Features 18
PDB binders 0
Druggability 0.067

Overview

Basic information about this protein and its source genome.

Accession
VK055_4282
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK82827.1
Status
annotated
Amino acids
72
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
85.01

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.067
Structure A0A0H3H2C2
Pocket Pocket 1
P2Rank
Structure A0A0H3H2C2
Pocket No pockets
ColabFold model
FPocket 0.584 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 91 / 4744 genomes with a hit
Normalized 0.019

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

18 records
Show feature table
Start End DB Term Name
23 70 Pfam PF06004 Bacterial protein of unknown function (DUF903)
23 70 InterPro IPR047807 Lipoprotein YgdI/YgdR-like, SH3-like domain
4 15 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
4 26 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 22 Phobius SIGNAL_PEPTIDE Signal peptide region
1 20 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
1 19 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 71 PANTHER PTHR37011 POT FAMILY PEPTIDE TRANSPORT PROTEIN-RELATED
1 71 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
2 71 NCBIfam NF033216 YgdI/YgdR family lipoprotein
2 71 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
19 71 Gene3D G3DSA:2.30.30.100 -
1 22 SignalP_EUK SignalP-noTM SignalP-noTM
23 72 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
16 22 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
21 71 SUPERFAMILY SSF50182 Sm-like ribonucleoproteins
21 71 InterPro IPR010920 LSM domain superfamily
1 3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H2C2
AlphaFold — — full sequence — Viewing
ColabFold VK055_4282
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer