Protein profile

VK055_4669

P-type conjugative transfer protein TrbJ

Genome: KpATCC43816

Gene: AIK83203.1 trbJ Structure source: ColabFold
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Amino acids 235
Annotations 0
Features 6
PDB binders 0
Druggability 0.807

Overview

Basic information about this protein and its source genome.

Accession
VK055_4669
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK83203.1 trbJ
Status
annotated
Amino acids
235
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Extracellular
ColabFold pLDDT
76.86

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.807
Structure CB_VK055_4669
Pocket Pocket 1
P2Rank 0.173
Structure CB_VK055_4669
Pocket Pocket 1
ColabFold model
FPocket 0.807 · Pocket 1
P2Rank 0.173 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 11 / 4744 genomes with a hit
Normalized 0.002

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

6 records
Show feature table
Start End DB Term Name
28 48 Coils Coil Coil
8 204 SUPERFAMILY SSF101082 Typo IV secretion system protein TraC
208 235 MobiDBLite mobidb-lite consensus disorder prediction
142 176 Coils Coil Coil
3 235 NCBIfam TIGR02780 P-type conjugative transfer protein TrbJ
3 235 InterPro IPR014147 Type IV conjugative transfer protein TrbJ

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_4669
ColabFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.807

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 3.05 0.101