Protein profile

VK055_4676

SEC-C motif family protein

Genome: KpATCC43816

Gene: AIK83210.1 Structure source: ColabFold
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Amino acids 792
Annotations 0
Features 4
PDB binders 0
Druggability 0.87

Overview

Basic information about this protein and its source genome.

Accession
VK055_4676
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK83210.1
Status
annotated
Amino acids
792
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
82.609
Localization
Cytoplasmic
ColabFold pLDDT
88.18

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.87
Structure CB_VK055_4676
Pocket Pocket 4
P2Rank 0.608
Structure CB_VK055_4676
Pocket Pocket 1
ColabFold model
FPocket 0.87 · Pocket 4
P2Rank 0.608 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 1 / 4744 genomes with a hit
Normalized 0

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

4 records
Show feature table
Start End DB Term Name
774 792 Pfam PF02810 SEC-C motif
774 792 InterPro IPR004027 SEC-C motif
683 792 Gene3D G3DSA:3.10.450.50 -
771 791 SUPERFAMILY SSF103642 Sec-C motif

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_4676
ColabFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.87
57 0.78
55 0.46
23 0.273

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 6.45 0.325
2 6.3 0.316
3 4.03 0.161
4 2.43 0.066
5 1.75 0.032