Protein profile

KP13_00120

AcrB-like protein

Genome: KpKP13

Gene: AHE42038.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GYW5
Amino acids 1035
Annotations 8
Features 87
PDB binders 34
Druggability 0.772

Overview

Basic information about this protein and its source genome.

Accession
KP13_00120
Gene
AHE42038.1
Status
annotated
Amino acids
1035
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
57.466
DEG E-value
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
90.55

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.772
Structure A0A0H3GYW5
Pocket Pocket 27
P2Rank 0.947
Structure A0A0H3GYW5
Pocket Pocket 1
ColabFold model
FPocket 0.779 · Pocket 58
P2Rank 0.965 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 247 / 4744 genomes with a hit
Normalized 0.052

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0015562 Enables the transfer of a specific substance or related group of substances from the inside of the cell to the outside of the cell across a membrane.
  • GO:0042908 The directed movement of a xenobiotic into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0009636 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.

Sequence Features

Domain/signature hits from InterPro and related databases.

87 records
Show feature table
Start End DB Term Name
28 340 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
554 868 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
389 393 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
5 27 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
367 389 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1024 1035 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
39 137 FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter
920 948 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
969 991 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1001 1023 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
137 331 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
476 498 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
181 279 FunFam G3DSA:3.30.2090.10:FF:000001 Efflux pump membrane transporter
11 22 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
2 1024 Pfam PF00873 AcrB/AcrD/AcrF family
2 1024 InterPro IPR001036 Acriflavin resistance protein
534 553 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
670 868 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
868 887 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
2 1033 NCBIfam TIGR00915 efflux RND transporter permease subunit
2 1033 InterPro IPR004764 Multidrug resistance protein MdtF-like
915 919 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 1031 PANTHER PTHR32063 -
1 1031 InterPro IPR001036 Acriflavin resistance protein
39 818 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
568 669 FunFam G3DSA:3.30.70.1430:FF:000002 Efflux pump membrane transporter
670 854 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
415 438 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
181 279 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
181 279 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
439 459 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
869 887 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
888 893 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
394 414 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
341 360 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
134 332 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
393 415 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
720 807 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
720 807 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
367 388 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
834 1024 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
471 498 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
969 989 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
361 366 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
894 916 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
926 948 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
460 470 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
439 461 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
995 1023 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
722 810 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
722 810 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
568 669 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
8 513 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
471 494 PRINTS PR00702 Acriflavin resistance protein family signature
471 494 InterPro IPR001036 Acriflavin resistance protein
550 567 PRINTS PR00702 Acriflavin resistance protein family signature
550 567 InterPro IPR001036 Acriflavin resistance protein
37 55 PRINTS PR00702 Acriflavin resistance protein family signature
37 55 InterPro IPR001036 Acriflavin resistance protein
364 385 PRINTS PR00702 Acriflavin resistance protein family signature
364 385 InterPro IPR001036 Acriflavin resistance protein
392 416 PRINTS PR00702 Acriflavin resistance protein family signature
392 416 InterPro IPR001036 Acriflavin resistance protein
337 360 PRINTS PR00702 Acriflavin resistance protein family signature
337 360 InterPro IPR001036 Acriflavin resistance protein
619 633 PRINTS PR00702 Acriflavin resistance protein family signature
619 633 InterPro IPR001036 Acriflavin resistance protein
446 469 PRINTS PR00702 Acriflavin resistance protein family signature
446 469 InterPro IPR001036 Acriflavin resistance protein
9 33 PRINTS PR00702 Acriflavin resistance protein family signature
9 33 InterPro IPR001036 Acriflavin resistance protein
563 669 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
514 1020 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
499 533 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
990 994 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
39 132 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
1 10 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
320 508 FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter
341 360 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
183 273 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
183 273 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
23 27 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
949 968 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
297 497 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
894 914 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 27 Phobius SIGNAL_PEPTIDE Signal peptide region
534 553 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GYW5
AlphaFold full sequence Viewing
ColabFold KP13_00120
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.613
49 0.403
53 0.215

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 18.79 0.83
2 6.3 0.316
3 5.4 0.256
4 4.8 0.213
5 4.76 0.21

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

137 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q2FD94 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
3YI P31224 725.8 Da LogP 4.57 TPSA 218.4 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O/C=C/[C@@H]([C@H]([C…
5QF P31224 526.7 Da LogP 3.92 TPSA 80.1 1 viol. ✓ Clean CC1(Cc2c(c(nc(c2C#N)SCCc3ccc(c(c3)OC)OC)N4CCN(C…
8K6 P31224 254.5 Da LogP 7.27 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCCCC
AIC P31224 349.4 Da LogP 0.32 TPSA 112.7 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](…
AIX Q5F725 351.4 Da LogP 0.26 TPSA 121.5 ✓ Ro5 ✓ Clean CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)[C@@H](c2…
AV0 P52002 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@H]1[C@@H]([C@H]([C…
C14 P31224 198.4 Da LogP 5.71 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCC
D10 P31224 142.3 Da LogP 4.15 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCC
D12 P31224 170.3 Da LogP 4.93 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCCCC
DD9 P31224 128.3 Da LogP 3.76 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCC
DDQ P31224 201.4 Da LogP 3.70 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)[O-]
DDR P31224 400.6 Da LogP 5.72 TPSA 72.8 1 viol. ✓ Clean CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCCCCC
DM2 P31224 543.5 Da LogP 0.00 TPSA 206.1 3 viol. Alert C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3…
ERY P31224 733.9 Da LogP 1.79 TPSA 193.9 2 viol. ✓ Clean CC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@](…
ET Q2FD70 314.4 Da LogP 4.13 TPSA 55.9 ✓ Ro5 Alert CC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N
ETE P31224 208.3 Da LogP -0.33 TPSA 57.2 ✓ Ro5 ✓ Clean COCCOCCOCCOCCO
FUA P31224 516.7 Da LogP 5.67 TPSA 104.1 2 viol. ✓ Clean C[C@H]1[C@@H]2CC[C@]3([C@H]([C@]2(CC[C@H]1O)C)[…
HEX P31224 86.2 Da LogP 2.59 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCC
LMT P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
LMU P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…
LPX P31224 453.6 Da LogP 4.46 TPSA 128.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@](=O)(O)OCCN)O
MIY P31224 457.5 Da LogP 0.19 TPSA 164.6 ✓ Ro5 ✓ Clean CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[…
MYS P31224 212.4 Da LogP 6.10 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCC
OCT P31224 114.2 Da LogP 3.37 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCC
P3G P31224 250.3 Da LogP 1.11 TPSA 46.2 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCC
P9D P52002 693.8 Da LogP 0.91 TPSA 212.5 2 viol. ✓ Clean CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2…
PTY Q2FD70 734.1 Da LogP 11.67 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC…
PUY P31224 471.5 Da LogP -0.79 TPSA 160.9 1 viol. ✓ Clean CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H]…
R16 P31224 226.4 Da LogP 6.49 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCC
RBT P31224 847.0 Da LogP 4.62 TPSA 205.5 2 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFP P31224 823.0 Da LogP 4.34 TPSA 220.1 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
XPE P31224 458.5 Da LogP -0.88 TPSA 123.5 1 viol. ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCOCCOCCO)O
YQM Q2FD94 558.6 Da LogP 0.14 TPSA 193.7 2 viol. ✓ Clean CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.