Protein profile

KP13_31552

Glycerol uptake facilitator protein

Genome: KpKP13

Gene: glpF AHE42071.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3H4L2
Amino acids 283
Annotations 5
Features 45
PDB binders 2
Druggability 0.973

Overview

Basic information about this protein and its source genome.

Accession
KP13_31552
Gene
glpF AHE42071.1
Status
annotated
Amino acids
283
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
44.211
Human E-value
1.75e-12
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
92.69

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.973
Structure A0A0H3H4L2
Pocket Pocket 1
P2Rank 0.639
Structure A0A0H3H4L2
Pocket Pocket 1
ColabFold model
FPocket 0.936 · Pocket 1
P2Rank 0.678 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 147 / 4744 genomes with a hit
Normalized 0.031

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0015267 Enables the energy-independent facilitated diffusion of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015254 Enables the energy-independent facilitated diffusion of glycerol through a transmembrane aqueous pore or channel.

Sequence Features

Domain/signature hits from InterPro and related databases.

45 records
Show feature table
Start End DB Term Name
230 249 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
178 200 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
10 254 CDD cd00333 MIP
10 254 InterPro IPR000425 Major intrinsic protein
85 104 PRINTS PR00783 Major intrinsic protein family signature
85 104 InterPro IPR000425 Major intrinsic protein
151 169 PRINTS PR00783 Major intrinsic protein family signature
151 169 InterPro IPR000425 Major intrinsic protein
48 72 PRINTS PR00783 Major intrinsic protein family signature
48 72 InterPro IPR000425 Major intrinsic protein
9 28 PRINTS PR00783 Major intrinsic protein family signature
9 28 InterPro IPR000425 Major intrinsic protein
184 206 PRINTS PR00783 Major intrinsic protein family signature
184 206 InterPro IPR000425 Major intrinsic protein
234 254 PRINTS PR00783 Major intrinsic protein family signature
234 254 InterPro IPR000425 Major intrinsic protein
9 257 SUPERFAMILY SSF81338 Aquaporin-like
9 257 InterPro IPR023271 Aquaporin-like
80 85 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
178 197 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
198 229 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
167 177 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
2 251 Pfam PF00230 Major intrinsic protein
2 251 InterPro IPR000425 Major intrinsic protein
66 74 ProSitePatterns PS00221 MIP family signature.
66 74 InterPro IPR022357 Major intrinsic protein, conserved site
143 165 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
12 34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
44 66 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 259 Gene3D G3DSA:1.20.1080.10 Glycerol uptake facilitator protein.
1 259 InterPro IPR023271 Aquaporin-like
9 272 PANTHER PTHR43829 AQUAPORIN OR AQUAGLYCEROPORIN RELATED
46 79 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
12 34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
250 283 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
35 45 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
86 108 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
13 251 NCBIfam TIGR00861 MIP family channel protein
13 251 InterPro IPR000425 Major intrinsic protein
86 108 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
145 166 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
230 249 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 259 FunFam G3DSA:1.20.1080.10:FF:000004 Glycerol facilitator
109 144 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H4L2
AlphaFold full sequence Viewing
ColabFold KP13_31552
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.973
7 0.503
15 0.342
6 0.249

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 7.57 0.399
2 5.62 0.27
3 3.62 0.135
4 1.9 0.038
5 1.67 0.028

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

63 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q6J8I9 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
PS6 P55064 567.7 Da LogP 5.27 TPSA 171.7 2 viol. ✓ Clean CCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@@](=O)(O)OC[C@H…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.