Protein profile

KP13_31497

Orotate phosphoribosyltransferase

Genome: KpKP13

Gene: pyrE AHE42096.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GXD7
Amino acids 213
Annotations 8
Features 14
PDB binders 20
Druggability 0.116

Overview

Basic information about this protein and its source genome.

Accession
KP13_31497
Gene
pyrE AHE42096.1
Status
annotated
Amino acids
213
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
31.183
Human E-value
3.16e-08
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
70.423
DEG E-value
4.0700000000000003e-107
Localization
Cytoplasmic
ColabFold pLDDT
95.77

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.116
Structure A0A0H3GXD7
Pocket Pocket 11
P2Rank 0.075
Structure A0A0H3GXD7
Pocket Pocket 1
ColabFold model
FPocket 0.034 · Pocket 7
P2Rank 0.069 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 306 / 4744 genomes with a hit
Normalized 0.065

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0004588 Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate.
  • GO:0006221 The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0000287 Binding to a magnesium (Mg) ion.
  • GO:0006207 The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
  • GO:0044205 The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD+ or oxygen.
  • GO:0046132 The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
10 187 NCBIfam TIGR00336 orotate phosphoribosyltransferase
10 187 InterPro IPR004467 Orotate phosphoribosyl transferase domain
1 213 PANTHER PTHR46683 OROTATE PHOSPHORIBOSYLTRANSFERASE 1-RELATED
2 211 SUPERFAMILY SSF53271 PRTase-like
2 211 InterPro IPR029057 Phosphoribosyltransferase-like
1 213 Gene3D G3DSA:3.40.50.2020 -
1 213 InterPro IPR029057 Phosphoribosyltransferase-like
50 159 Pfam PF00156 Phosphoribosyl transferase domain
50 159 InterPro IPR000836 Phosphoribosyltransferase domain
1 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE].
1 213 InterPro IPR023031 Orotate phosphoribosyltransferase
1 213 FunFam G3DSA:3.40.50.2020:FF:000008 Orotate phosphoribosyltransferase
49 174 CDD cd06223 PRTases_typeI
49 174 InterPro IPR000836 Phosphoribosyltransferase domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GXD7
AlphaFold full sequence Viewing
ColabFold KP13_31497
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.5 0.022
2 1.28 0.013

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

74 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5BU P11172 403.1 Da LogP -1.97 TPSA 171.3 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)…
5FU P11172 342.2 Da LogP -2.60 TPSA 171.3 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)…
5IU P11172 434.1 Da LogP -1.10 TPSA 151.1 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)I)COP(=O…
6AU P11172 366.2 Da LogP -2.53 TPSA 188.4 ✓ Ro5 ✓ Clean CC(=O)C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H…
6CN P11172 349.2 Da LogP -2.86 TPSA 195.1 ✓ Ro5 ✓ Clean C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)C#N
6ZJ P9WHK9 434.0 Da LogP -2.96 TPSA 198.3 1 viol. ✓ Clean C1C(=O)O[Fe]234(OC(=O)CC1(C(=O)O2)O)OC(=O)CC(CC…
BMP P11172 340.2 Da LogP -3.03 TPSA 191.5 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
CNU P11172 349.2 Da LogP -2.86 TPSA 195.1 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)C#N
JW5 P11172 354.2 Da LogP -3.24 TPSA 191.5 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
NUP P11172 339.2 Da LogP -3.15 TPSA 197.3 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
OMP P08870 368.2 Da LogP -3.04 TPSA 208.6 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
PFU P11172 339.2 Da LogP -2.51 TPSA 208.4 1 viol. ✓ Clean C([C@@H]1[C@H]([C@H]([C@@H](O1)c2c(c([nH]n2)C(=…
QRT P11172 367.2 Da LogP -3.64 TPSA 214.4 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
QRZ P11172 383.3 Da LogP -3.10 TPSA 197.3 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
S5P P11172 356.2 Da LogP -2.45 TPSA 171.3 1 viol. ✓ Clean C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)…
U P11172 324.2 Da LogP -2.73 TPSA 171.3 ✓ Ro5 ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
U1P P11172 351.2 Da LogP -2.74 TPSA 195.2 1 viol. ✓ Clean [H]/N=C/C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C…
UEP P11172 352.2 Da LogP -2.17 TPSA 171.3 ✓ Ro5 ✓ Clean CCC1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2…
UFT P11172 326.2 Da LogP -1.76 TPSA 151.1 ✓ Ro5 ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
XMP P11172 365.2 Da LogP -3.44 TPSA 201.2 1 viol. ✓ Clean c1[nH+]c2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.