Protein target profile

KP13_00667

Glycogen phosphorylase

Genome: KpKP13 Gene: AHE42286.1 glgP 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3H442
Length 815
Pocket druggability 0.764
Direct ligand evidence 0 266 total records
Functional annotation 0 EC 4 GO
Target summary

Promising target candidate with multiple supporting evidence streams.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
58.904 Lower values reduce human off-target concern.
Human E-value
3.42e-85
Gut microbiome similarity
3.2% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
0.0 Higher values support similarity to known essential genes.

Localization

Localization
Cytoplasmic

Structure confidence

ColabFold pLDDT
94.6 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.764
Structure A0A0H3H442
Pocket Pocket 1
P2Rank 0.981
Structure A0A0H3H442
Pocket Pocket 1
ColabFold model
FPocket 0.219 · Pocket 2
P2Rank 0.985 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 153 / 4744 genomes with a hit
Prevalence 3.2%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Chemistry

ChEMBL CHEMBL3322297 ChEMBL CHEMBL394526 ChEMBL CHEMBL440528 ChEMBL DXH ChEMBL CHEMBL134802 ChEMBL CHEMBL458655 ChEMBL CHEMBL471266 ChEMBL CHEMBL449986 ChEMBL CHEMBL459792 ChEMBL CHEMBL506011 ChEMBL CHEMBL217994 ChEMBL CHEMBL423509 ChEMBL CHEMBL480195 ChEMBL CHEMBL481534 ChEMBL CHEMBL115651 ChEMBL CHEMBL434025 ChEMBL CHEMBL472140 ChEMBL CHEMBL474193 ChEMBL CHEMBL3323454 ChEMBL CHEMBL395733 ChEMBL CHEMBL443938 ChEMBL CHEMBL472292 ChEMBL CHEMBL473851 ChEMBL CHEMBL479920 ChEMBL CHEMBL113736 ChEMBL CHEMBL133911 ChEMBL CHEMBL219059 ChEMBL CHEMBL516081 ChEMBL CHEMBL471469 ChEMBL CHEMBL473486 ChEMBL CHEMBL482146 ChEMBL CHEMBL115341 ChEMBL CHEMBL324288 ChEMBL CHEMBL326950 ChEMBL CHEMBL133832 ChEMBL CHEMBL179485 ChEMBL CHEMBL337224 ChEMBL CHEMBL396724 ChEMBL CHEMBL488273 ChEMBL CHEMBL114226 ChEMBL CHEMBL334272 ChEMBL CHEMBL474098 ChEMBL CHEMBL512725 ChEMBL CHEMBL519796 ChEMBL CHEMBL139472 ChEMBL CHEMBL481535 ChEMBL CHEMBL513400 ChEMBL CHEMBL479728 ChEMBL CHEMBL180776 ChEMBL CHEMBL475217 ChEMBL CHEMBL1084328 ChEMBL CHEMBL218714 ChEMBL CHEMBL233656 ChEMBL CHEMBL473850 ChEMBL CHEMBL473852 ChEMBL CHEMBL1084762 ChEMBL CHEMBL474297 ChEMBL CHEMBL114846 ChEMBL CHEMBL458289 ChEMBL CHEMBL231836 ChEMBL CHEMBL234950 ChEMBL CHEMBL516945 ChEMBL CHEMBL198408 ChEMBL CHEMBL217993 ChEMBL CHEMBL442404 ChEMBL CHEMBL474520 ChEMBL CHEMBL482147 ChEMBL CHEMBL2030481 ChEMBL CHEMBL475378 ChEMBL CHEMBL132191 ChEMBL CHEMBL337332 ChEMBL CHEMBL475639 ChEMBL CHEMBL114731 ChEMBL CHEMBL233447 ChEMBL CHEMBL487421 ChEMBL CHEMBL488274 ChEMBL CHEMBL231835 ChEMBL CHEMBL520765 ChEMBL CHEMBL233446 ChEMBL CHEMBL516918 ChEMBL CHEMBL113762 ChEMBL CHEMBL133274 ChEMBL CHEMBL234951 ChEMBL CHEMBL1083642 ChEMBL CHEMBL425526 ChEMBL CHEMBL433766 ChEMBL 6NE ChEMBL CHEMBL217903 ChEMBL CHEMBL181072 ChEMBL CHEMBL335077 ChEMBL CHEMBL457860 ChEMBL CHEMBL481363 ChEMBL CHEMBL115441 ChEMBL CHEMBL139461 ChEMBL CHEMBL233657 ChEMBL CHEMBL134854 ChEMBL CHEMBL475765 ChEMBL CHEMBL1082392 ChEMBL CHEMBL1084228 ChEMBL CHEMBL394527

Sequence

Primary amino-acid sequence viewer.

MNVPFSYASPTLSVEALKHSIAYKLMFIIGKDPAIANKHEWLNATLFAVRDRMVERWLRSNRAQLSQEVRQVYYLSMEFLIGRTLSNALLSLGIYDDVSSALAEMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLAALGLPGRGYGIRYDYGMFKQNIVDGRQKESPDYWLEYGNPWEFERHNTRYKVRFGGRIQQEGKKTRWIETEEIIAEAYDQIIPGFDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYMLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDEAFEVTCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLSRTSIIDESNGRRVRMAWLAVVVSHKVNGVSELHSRLMVESLFAEFAKIFPMRFINVTNGVTPRRWLALANPPLSKVLDEHIGRTWRTDLSQLDELKQHIDYPMVNQAVRQAKFENKQRLASYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPQAEWVPRVNIFAGKAASAYYMAKHIIHLINDVAAVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMQEHVGEENIFIFGNTAEEVEELRRSGYKPREYYEQDEELHQALTQIGTGVFSPAEPGRYRDLLDSLINFGDHYQVLADYRSYVDCQDRVDELYQNPEEWAYKAMLNIANMGYFSSDRTIQEYAKYIWHIDPVRL

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0030170 Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
  • GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
  • GO:0008184 Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.
  • GO:0004645 Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
468 795 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B;
11 813 PANTHER PTHR11468 GLYCOGEN PHOSPHORYLASE
11 813 InterPro IPR000811 Glycosyl transferase, family 35
14 810 NCBIfam TIGR02093 glycogen/starch/alpha-glucan family phosphorylase
14 810 InterPro IPR011833 Glycogen/starch/alpha-glucan phosphorylase
25 812 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B;
25 470 FunFam G3DSA:3.40.50.2000:FF:000034 Alpha-1,4 glucan phosphorylase
2 815 PIRSF PIRSF000460 Glucan_phosphorylase_GlgP
2 815 InterPro IPR000811 Glycosyl transferase, family 35
654 666 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site.
654 666 InterPro IPR035090 Phosphorylase pyridoxal-phosphate attachment site
471 795 FunFam G3DSA:3.40.50.2000:FF:000003 Alpha-1,4 glucan phosphorylase
9 814 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase
102 810 Pfam PF00343 Carbohydrate phosphorylase
102 810 InterPro IPR000811 Glycosyl transferase, family 35
18 810 CDD cd04300 GT35_Glycogen_Phosphorylase

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

Download VMD script Full viewer

Loading 3D structure...

Drag to rotate — click the view, then scroll to zoom.

Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #1
0.764
Likely same site as P2Rank 3 0.9 Å 12 shared residues 100% of smaller site
Show in viewer
Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.981
Show in viewer
Surrounding area
Site 2 P2Rank #2
0.316
Show in viewer
Surrounding area
Site 3 P2Rank #3
0.267
Likely same site as FPocket 1 0.9 Å 12 shared residues 100% of smaller site
Show in viewer
Surrounding area
Site 4 P2Rank #4
0.233
Show in viewer
Surrounding area
Site 5 P2Rank #5
0.193
Show in viewer
Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3H442
AlphaFold DB full sequence Viewing
ColabFold KP13_00667
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

266 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 216 records from similar proteins
Structural ligands 116 0 loaded crystals
Measured bioactivity 100 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
0AS PDB via homolog 488.7 Da · LogP 5.03 · TPSA 98.0 Open detail RCSB PDB
0MA PDB via homolog Detail RCSB PDB
12E PDB via homolog Detail RCSB PDB
16F PDB via homolog Detail RCSB PDB
16O PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0AS RCSB PDB P00489 488.7 Da LogP 5.03 TPSA 98.0 1 viol. ✓ Clean C[C@@H]1CC[C@@]2(CC[C@@]3(C(=CC[C@H]4[C@]3(CC[C…
0MA RCSB PDB P00489 470.7 Da LogP 5.98 TPSA 77.8 1 viol. ✓ Clean CC1(C[C@H]2C3=CC[C@H]4[C@]([C@@]3(CC[C@]2(C=C1)…
12E RCSB PDB P00489 342.4 Da LogP -2.32 TPSA 139.5 1 viol. ✓ Clean c1cnccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H]([…
16F RCSB PDB P00489 357.4 Da LogP -2.01 TPSA 146.8 1 viol. ✓ Clean c1cc(cc(c1)O)/C=N\NC(=S)N[C@H]2[C@@H]([C@H]([C@…
16O RCSB PDB P00489 420.3 Da LogP -0.95 TPSA 126.6 1 viol. ✓ Clean c1cc(ccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
179 RCSB PDB P00489 376.4 Da LogP -1.31 TPSA 148.3 1 viol. ✓ Clean c1ccc2cc(ccc2c1)NC(=O)C(=O)N[C@H]3[C@@H]([C@H](…
17S RCSB PDB P00489 371.4 Da LogP -1.71 TPSA 135.8 1 viol. ✓ Clean COc1ccc(cc1)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@…
17T RCSB PDB P00489 375.8 Da LogP -1.06 TPSA 126.6 1 viol. ✓ Clean c1cc(ccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
18O RCSB PDB P00489 386.4 Da LogP -1.81 TPSA 169.7 1 viol. ✓ Clean c1cc(ccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
18S RCSB PDB P00489 355.4 Da LogP -1.41 TPSA 126.6 1 viol. ✓ Clean Cc1ccc(cc1)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H…
195 RCSB PDB P00489 586.5 Da LogP 5.20 TPSA 228.3 2 viol. ✓ Clean c1cc(cc(c1)[N+](=O)[O-])C(=O)Nc2ccc(c(c2)NC(=O)…
20X RCSB PDB P00489 359.4 Da LogP -1.58 TPSA 126.6 1 viol. ✓ Clean c1cc(ccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
21N RCSB PDB P00489 409.4 Da LogP -0.70 TPSA 126.6 1 viol. ✓ Clean c1cc(ccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
22O RCSB PDB P00489 420.3 Da LogP -0.95 TPSA 126.6 1 viol. ✓ Clean c1cc(cc(c1)Br)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C…
22S RCSB PDB P00489 375.8 Da LogP -1.06 TPSA 126.6 1 viol. ✓ Clean c1ccc(c(c1)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H…
23V RCSB PDB P00489 375.8 Da LogP -1.06 TPSA 126.6 1 viol. ✓ Clean c1cc(cc(c1)Cl)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C…
24S RCSB PDB P00489 386.4 Da LogP -1.81 TPSA 169.7 1 viol. ✓ Clean c1ccc(c(c1)/C=N\NC(=S)N[C@H]2[C@@H]([C@H]([C@@H…
25E RCSB PDB P00489 357.4 Da LogP -2.01 TPSA 146.8 1 viol. Alert c1cc(ccc1/C=N\NC(=S)N[C@H]2[C@@H]([C@H]([C@@H](…
26M RCSB PDB P00489 389.4 Da LogP -0.35 TPSA 128.5 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)OCC(=O)N[C@H]3[C@@H]([C@H](…
26O RCSB PDB P00489 357.4 Da LogP -2.01 TPSA 146.8 1 viol. Alert c1ccc(c(c1)/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H…
26Q RCSB PDB P00489 385.4 Da LogP 0.28 TPSA 119.3 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)/C=C/C(=O)N[C@H]3[C@@H]([C@…
26R RCSB PDB P00489 367.4 Da LogP -0.10 TPSA 119.3 ✓ Ro5 ✓ Clean C[C@H](Cc1ccc(cc1)C(C)C)C(=O)N[C@H]2[C@@H]([C@H…
26V RCSB PDB P00489 379.5 Da LogP -0.20 TPSA 119.3 ✓ Ro5 ✓ Clean c1cc2c(cc1CCCC(=O)N[C@H]3[C@@H]([C@H]([C@@H]([C…
26W RCSB PDB P00489 353.4 Da LogP -0.34 TPSA 119.3 ✓ Ro5 ✓ Clean CCc1ccc(cc1)[C@H](C)CC(=O)N[C@H]2[C@@H]([C@H]([…
26Y RCSB PDB P00489 351.4 Da LogP -0.26 TPSA 119.3 ✓ Ro5 ✓ Clean CC(C)c1ccc(cc1)/C=C/C(=O)N[C@H]2[C@@H]([C@H]([C…
2TH RCSB PDB P00489 332.8 Da LogP 3.27 TPSA 65.1 ✓ Ro5 ✓ Clean c1ccc2c(c1)C[C@H]([C@@H]2O)NC(=O)c3cc4cc(sc4[nH…
376 RCSB PDB P00489 376.4 Da LogP -1.31 TPSA 148.3 1 viol. ✓ Clean c1ccc2c(c1)cccc2NC(=O)C(=O)N[C@H]3[C@@H]([C@H](…
3TH RCSB PDB P00489 345.8 Da LogP 3.18 TPSA 74.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)C[C@H](C(=O)N2)NC(=O)c3cc4cc(sc4[nH]…
4D0 RCSB PDB P00489 430.5 Da LogP -0.09 TPSA 148.3 1 viol. ✓ Clean c1ccc(cc1)c2ccc(cc2)CCC(=O)NC(=O)N[C@H]3[C@@H](…
4D1 RCSB PDB P00489 394.4 Da LogP -0.55 TPSA 148.3 1 viol. ✓ Clean CC(C)c1ccc(cc1)/C=C/C(=O)NC(=O)N[C@H]2[C@@H]([C…
57D RCSB PDB P00489 254.2 Da LogP 2.87 TPSA 70.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=CC(=O)c3c(cc(cc3O2)O)O
62N RCSB PDB P00489 394.3 Da LogP -1.06 TPSA 148.3 1 viol. ✓ Clean c1cc(ccc1C(=O)NC(=O)N[C@H]2[C@@H]([C@H]([C@@H](…
7LS RCSB PDB P00489 466.5 Da LogP -0.05 TPSA 169.9 1 viol. ✓ Clean c1ccc2c(c1)C(=O)c3cc(ccc3N2)NC4=NC(=O)N(C=C4)[C…
9GP RCSB PDB P00489 237.2 Da LogP -4.11 TPSA 139.5 1 viol. ✓ Clean C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)NC(=O)CO)…
9L2 RCSB PDB P00489 305.3 Da LogP -0.44 TPSA 124.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c[nH]c(n2)[C@H]3[C@@H]([C@H]([C@@H]…
9L8 RCSB PDB P00489 356.4 Da LogP 0.11 TPSA 137.5 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)c3nc([nH]n3)[C@H]4[C@@H]([C@H](…
9LB RCSB PDB P00489 306.3 Da LogP -1.05 TPSA 137.5 ✓ Ro5 ✓ Clean c1ccc(cc1)c2[nH]c(nn2)[C@H]3[C@@H]([C@H]([C@@H]…
AZZ RCSB PDB P00489 267.2 Da LogP -0.20 TPSA 133.1 ✓ Ro5 Alert CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)N=[…
B0W RCSB PDB P00489 351.3 Da LogP -1.32 TPSA 169.0 1 viol. ✓ Clean c1cc(ccc1c2[nH]c(nn2)[C@H]3[C@@H]([C@H]([C@@H](…
B0Z RCSB PDB P00489 375.3 Da LogP 0.01 TPSA 131.7 ✓ Ro5 ✓ Clean c1cc(ccc1c2[nH]c(nn2)[C@H]3[C@@H]([C@H]([C@@H](…
B1K RCSB PDB P00489 337.3 Da LogP -1.00 TPSA 141.0 ✓ Ro5 ✓ Clean COc1ccc(cc1)c2[nH]nc(n2)[C@H]3[C@@H]([C@H]([C@@…
BIN RCSB PDB P00489 406.8 Da LogP 3.58 TPSA 104.8 ✓ Ro5 ✓ Clean CC[n+]1c(c(c(c(c1C(=O)O)C(=O)O)c2ccccc2Cl)C(=O)…
BN2 RCSB PDB P00489 487.8 Da LogP 6.02 TPSA 104.7 1 viol. ✓ Clean c1ccc(c(c1)C(=O)NC(=O)Nc2cc(c(c(c2)Cl)OCCCCCCC(…
BN3 RCSB PDB P00489 445.7 Da LogP 4.85 TPSA 104.7 ✓ Ro5 ✓ Clean c1cc(c(cc1OCCCC(=O)O)Cl)NC(=O)NC(=O)c2ccc(cc2Cl…
BN4 RCSB PDB P00489 439.3 Da LogP 4.82 TPSA 104.7 ✓ Ro5 ✓ Clean Cc1c(c(ccc1NC(=O)NC(=O)c2ccc(cc2Cl)Cl)OCCCC(=O)…
BN5 RCSB PDB P00489 439.3 Da LogP 4.90 TPSA 104.7 ✓ Ro5 ✓ Clean Cc1c(cccc1OCCCCC(=O)O)NC(=O)NC(=O)c2ccc(cc2Cl)Cl
CAW RCSB PDB P00489 376.4 Da LogP -0.92 TPSA 148.3 1 viol. ✓ Clean c1ccc2c(c1)cccc2C(=O)NC(=O)N[C@H]3[C@@H]([C@H](…
CFF RCSB PDB P00489 194.2 Da LogP -1.03 TPSA 61.8 ✓ Ro5 ✓ Clean Cn1cnc2c1C(=O)N(C(=O)N2C)C
CGG RCSB PDB P00489 354.3 Da LogP -0.65 TPSA 164.8 1 viol. Alert c1cc(c(cc1/C=C/C(=O)O[C@@H]2C[C@@](C[C@@H]([C@@…
CKQ RCSB PDB P00489 427.4 Da LogP 0.35 TPSA 169.0 1 viol. ✓ Clean c1cc(ccc1c2ccc(cc2)C(=O)O)c3[nH]c(nn3)[C@H]4[C@…
CKW RCSB PDB P00489 383.4 Da LogP 0.65 TPSA 131.7 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)c3[nH]c(nn3)[C@H]4[C@@H]([C…
CKZ RCSB PDB P00489 395.4 Da LogP 0.56 TPSA 131.7 ✓ Ro5 ✓ Clean c1ccc-2c(c1)Cc3c2ccc(c3)c4[nH]c(nn4)[C@H]5[C@@H…
CNK RCSB PDB P00489 357.4 Da LogP 0.14 TPSA 131.7 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2c3[nH]c(nn3)[C@H]4[C@@H]([C@H](…
CPB RCSB PDB P00489 401.8 Da LogP 3.30 TPSA 94.1 ✓ Ro5 ✓ Clean C[N@]1CC[C@@H]([C@@H](C1)O)c2c(cc(c3c2OC(=CC3=O…
D1F RCSB PDB P00489 368.4 Da LogP -1.56 TPSA 145.0 ✓ Ro5 ✓ Clean CCCCCC#CC1=CN(C(=O)NC1=O)C2C(C(C(C(O2)CO)O)O)O
D1I RCSB PDB P00489 368.4 Da LogP -0.31 TPSA 138.2 ✓ Ro5 ✓ Clean CCCCCC1=CC2=CN(C(=O)N=C2O1)[C@H]3[C@@H]([C@H]([…
D1J RCSB PDB P00489 340.3 Da LogP -2.34 TPSA 145.0 ✓ Ro5 ✓ Clean CCCC#CC1=CN(C(=O)NC1=O)C2C(C(C(C(O2)CO)O)O)O
D1K RCSB PDB P00489 340.3 Da LogP -1.09 TPSA 138.2 ✓ Ro5 ✓ Clean CCCC1=CC2=CN(C(=O)N=C2O1)[C@H]3[C@@H]([C@H]([C@…
DK4 RCSB PDB P00489 294.2 Da LogP -2.37 TPSA 124.8 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@H]([C@@H]([C@…
DK5 RCSB PDB P00489 363.3 Da LogP 0.47 TPSA 113.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)[C@H]3C[C@H]([C…
DKX RCSB PDB P00489 276.2 Da LogP -2.51 TPSA 124.8 ✓ Ro5 ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@H]([C@@H]([C@H…
DKY RCSB PDB P00489 379.3 Da LogP -0.55 TPSA 133.9 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)NC2=NC(=O)N(C=C2)[C@H]3[C@@H]([C…
DKZ RCSB PDB P00489 275.2 Da LogP -2.22 TPSA 130.8 ✓ Ro5 ✓ Clean C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@H]([C@@H]([C@H…
DL8 RCSB PDB P00489 364.4 Da LogP -2.14 TPSA 150.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2cn(nn2)CC(=O)N[C@H]3[C@@H]([C@H]([C…
DTT RCSB PDB P00489 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
F59 RCSB PDB P00489 402.4 Da LogP -0.41 TPSA 148.3 1 viol. ✓ Clean c1ccc(cc1)c2ccc(cc2)C(=O)NC(=O)N[C@H]3[C@@H]([C…
F68 RCSB PDB P00489 340.3 Da LogP -1.77 TPSA 148.3 1 viol. ✓ Clean Cc1ccc(cc1)C(=O)NC(=O)N[C@H]2[C@@H]([C@H]([C@@H…
F85 RCSB PDB P00489 382.4 Da LogP -0.78 TPSA 148.3 1 viol. ✓ Clean CC(C)(C)c1ccc(cc1)C(=O)NC(=O)N[C@H]2[C@@H]([C@H…
FRX RCSB PDB P00489 446.9 Da LogP 1.68 TPSA 114.5 ✓ Ro5 ✓ Clean c1ccc2c(c1)C[C@@H](C(=O)N2CC(=O)NCCO)NC(=O)c3cc…
FRY RCSB PDB P00489 402.9 Da LogP 1.08 TPSA 104.9 ✓ Ro5 ✓ Clean c1ccc2c(c1)C[C@@H](C(=O)N2CC(=O)N)NC(=O)C3=CC4=…
GDE RCSB PDB P00489 170.1 Da LogP 0.50 TPSA 98.0 ✓ Ro5 Alert c1c(cc(c(c1O)O)O)C(=O)O
GLS RCSB PDB P00489 248.2 Da LogP -4.00 TPSA 148.3 1 viol. ✓ Clean C([C@@H]1[C@H]([C@@H]([C@H]([C@]2(O1)C(=O)NC(=O…
HT8 RCSB PDB P00489 358.4 Da LogP -1.11 TPSA 131.6 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)C3=N[C@]4([C@@H]([C@H]([C@@H]([…
HTE RCSB PDB P00489 308.3 Da LogP -2.27 TPSA 131.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=N[C@]3([C@@H]([C@H]([C@@H]([C@H](O…
HTP RCSB PDB P00489 202.2 Da LogP -3.00 TPSA 113.5 ✓ Ro5 ✓ Clean c1c2[n+]([nH]n1)[C@@H]([C@H]([C@@H]([C@H]2O)O)O…
HTW RCSB PDB P00489 358.4 Da LogP -1.11 TPSA 131.6 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2C3=N[C@]4([C@@H]([C@H]([C@@H]([…
IAA RCSB PDB P00489 335.3 Da LogP 1.91 TPSA 100.7 ✓ Ro5 ✓ Clean C1C=CC=C\2C1=N/C(=C\3/C4=CC=CCC4=NC3=O)/C2=N/OC…
IMK RCSB PDB P00489 294.3 Da LogP -0.61 TPSA 118.8 ✓ Ro5 ✓ Clean Cc1ccc2c(c1)nc([nH]2)[C@H]3[C@@H]([C@H]([C@@H](…
IMP RCSB PDB P00489 348.2 Da LogP -2.15 TPSA 180.0 ✓ Ro5 ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O…
JN2 RCSB PDB P00489 377.4 Da LogP 0.02 TPSA 119.3 ✓ Ro5 ✓ Clean c1cc(cc(c1)C(=O)N[C@H]2[C@@H]([C@H]([C@@H]([C@H…
JNB RCSB PDB P00489 359.4 Da LogP -0.12 TPSA 119.3 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)C(=O)N[C@H]3[C@@H]([C@H]([C…
KOT RCSB PDB P00489 307.3 Da LogP -1.08 TPSA 120.9 ✓ Ro5 ✓ Clean c1ccc(cc1)c2cn(nn2)[C@H]3[C@@H]([C@H]([C@@H]([C…
KS2 RCSB PDB P00489 321.3 Da LogP -0.70 TPSA 131.7 ✓ Ro5 ✓ Clean Cc1ccc(cc1)c2[nH]c(nn2)[C@H]3[C@@H]([C@H]([C@@H…
KUQ RCSB PDB P00489 306.3 Da LogP -0.41 TPSA 118.8 ✓ Ro5 ✓ Clean c1ccc(cc1)c2[nH]cc(n2)[C@H]3[C@@H]([C@H]([C@@H]…
KV5 RCSB PDB P00489 356.4 Da LogP 0.74 TPSA 118.8 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)c3[nH]cc(n3)[C@H]4[C@@H]([C@H](…
KVE RCSB PDB P00489 373.4 Da LogP 1.48 TPSA 103.0 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)c3csc(n3)[C@H]4[C@@H]([C@H]([C@…
KVH RCSB PDB P00489 373.4 Da LogP 1.48 TPSA 103.0 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)c3nc(cs3)[C@H]4[C@@H]([C@H]([C@…
KVN RCSB PDB P00489 308.3 Da LogP -1.69 TPSA 133.8 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nnn(n2)[C@H]3[C@@H]([C@H]([C@@H]([C…
KVQ RCSB PDB P00489 323.4 Da LogP 0.32 TPSA 103.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc(cs2)[C@H]3[C@@H]([C@H]([C@@H]([C…
KVW RCSB PDB P00489 323.4 Da LogP 0.32 TPSA 103.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2csc(n2)[C@H]3[C@@H]([C@H]([C@@H]([C…
LEW RCSB PDB P00489 357.4 Da LogP 0.07 TPSA 120.9 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2c3cn(nn3)[C@H]4[C@@H]([C@H]([C@…
M07 RCSB PDB P00489 325.3 Da LogP -1.01 TPSA 121.0 ✓ Ro5 ✓ Clean COc1ccc(cc1)C2=NO[C@]3(C2)[C@@H]([C@H]([C@@H]([…
M08 RCSB PDB P00489 295.3 Da LogP -1.02 TPSA 111.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=NO[C@]3(C2)[C@@H]([C@H]([C@@H]([C@…
M09 RCSB PDB P00489 342.3 Da LogP -1.27 TPSA 154.6 ✓ Ro5 ✓ Clean c1cc(ccc1C2C[C@]3([C@@H]([C@H]([C@@H]([C@H](O3)…
M7C RCSB PDB P00489 368.4 Da LogP -1.78 TPSA 148.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)/N=C\2/NC(=O)[C@]3(S2)[C@@H]([C@…
M8P RCSB PDB P00489 418.4 Da LogP -0.63 TPSA 148.7 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)C(=O)/N=C\3/NC(=O)[C@]4(S3)[C@@…
MIF RCSB PDB P00489 264.3 Da LogP -3.05 TPSA 143.1 1 viol. ✓ Clean C([C@@H]1[C@H]([C@@H]([C@H]([C@]2(O1)C(=O)NC(=N…
N85 RCSB PDB P00489 365.3 Da LogP -1.59 TPSA 164.1 1 viol. ✓ Clean c1ccc2c(c1)cc([nH]2)C(=O)NC(=O)N[C@H]3[C@@H]([C…
NTZ RCSB PDB P00489 202.2 Da LogP -3.02 TPSA 124.5 ✓ Ro5 ✓ Clean C([C@@H]1[C@H]([C@@H]([C@H](c2n1nnn2)O)O)O)O
O9Q RCSB PDB P00489 268.3 Da LogP 3.18 TPSA 70.7 ✓ Ro5 ✓ Clean Cc1cccc(c1)C2=CC(=O)c3c(cc(cc3O2)O)O
O9T RCSB PDB P00489 268.3 Da LogP 3.18 TPSA 70.7 ✓ Ro5 ✓ Clean Cc1ccc(cc1)C2=CC(=O)c3c(cc(cc3O2)O)O
O9Z RCSB PDB P00489 272.2 Da LogP 3.01 TPSA 70.7 ✓ Ro5 ✓ Clean c1cc(ccc1C2=CC(=O)c3c(cc(cc3O2)O)O)F
OAK RCSB PDB P00489 283.3 Da LogP -1.78 TPSA 119.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)N[C@H]2[C@@H]([C@H]([C@@H]([C@H]…
PDP RCSB PDB P00489 327.1 Da LogP 0.63 TPSA 163.5 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)CO[P@](=O)(O)OP(=O)(O)O)C=O)O
PLR RCSB PDB P00489 233.2 Da LogP 1.01 TPSA 99.9 ✓ Ro5 ✓ Clean Cc1c(cnc(c1O)C)COP(=O)(O)O
QUE RCSB PDB P00489 302.2 Da LogP 1.99 TPSA 131.4 ✓ Ro5 Alert c1cc(c(cc1C2=C(C(=O)c3c(cc(cc3O2)O)O)O)O)O
RDD RCSB PDB P00489 261.2 Da LogP -4.16 TPSA 157.6 ✓ Ro5 ✓ Clean C([C@@H]1[C@H]([C@H]([C@@H](O1)N2C(=O)NC(=O)NC2…
REF RCSB PDB P00489 302.2 Da LogP 1.31 TPSA 141.3 ✓ Ro5 Alert c1c2c-3c(c(c1O)O)OC(=O)c4c3c(c(c(c4)O)O)OC2=O
RUG RCSB PDB P00489 261.2 Da LogP -3.26 TPSA 141.1 ✓ Ro5 ✓ Clean c1c(nnn1[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O…
S06 RCSB PDB P00489 347.4 Da LogP -0.02 TPSA 111.4 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)C3C[C@]4([C@@H]([C@H]([C@@H]([C…
S13 RCSB PDB P00489 311.3 Da LogP -0.87 TPSA 111.4 ✓ Ro5 ✓ Clean Cc1ccc(cc1)C2C[C@]3([C@@H]([C@H]([C@@H]([C@H](O…
SKY RCSB PDB P00489 357.4 Da LogP 0.07 TPSA 120.9 ✓ Ro5 ✓ Clean c1ccc2cc(ccc2c1)c3cn(nn3)[C@H]4[C@@H]([C@H]([C@…
THM RCSB PDB P00489 242.2 Da LogP -1.51 TPSA 104.6 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
Z15 RCSB PDB P00489 306.7 Da LogP -0.73 TPSA 130.6 1 viol. ✓ Clean c1c(c(cc(c1O)Cl)O)[C@H]2[C@@H]([C@H]([C@@H]([C@…
Z2T RCSB PDB P00489 320.7 Da LogP -0.43 TPSA 119.6 ✓ Ro5 ✓ Clean COc1cc(c(c(c1)Cl)O)[C@H]2[C@@H]([C@H]([C@@H]([C…
Z57 RCSB PDB P00489 351.1 Da LogP -0.62 TPSA 130.6 1 viol. ✓ Clean c1c(c(cc(c1O)Br)O)[C@H]2[C@@H]([C@H]([C@@H]([C@…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.