Protein profile

KP13_31620

Starvation-sensing protein rspB

Genome: KpKP13

Gene: AHE42464.1 rspB Structure source: AlphaFold + ColabFold UniProt A0A0H3H3M2
Amino acids 343
Annotations 2
Features 16
PDB binders 10
Druggability 0.536

Overview

Basic information about this protein and its source genome.

Accession
KP13_31620
Gene
AHE42464.1 rspB
Status
annotated
Amino acids
343
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
41.463
Human E-value
8.97e-12
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
97.04

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.536
Structure A0A0H3H3M2
Pocket Pocket 8
P2Rank 0.928
Structure A0A0H3H3M2
Pocket Pocket 1
ColabFold model
FPocket 0.549 · Pocket 18
P2Rank 0.942 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 67 / 4744 genomes with a hit
Normalized 0.014

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0008270 Binding to a zinc ion (Zn).

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
63 77 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature.
63 77 InterPro IPR002328 Alcohol dehydrogenase, zinc-type, conserved site
6 340 PANTHER PTHR43401 L-THREONINE 3-DEHYDROGENASE
176 302 Pfam PF00107 Zinc-binding dehydrogenase
176 302 InterPro IPR013149 Alcohol dehydrogenase-like, C-terminal
6 340 CDD cd08261 Zn_ADH7
18 325 Gene3D G3DSA:3.90.180.10 -
15 340 SMART SM00829 PKS_ER_names_mod
15 340 InterPro IPR020843 Polyketide synthase, enoylreductase domain
144 309 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
144 309 InterPro IPR036291 NAD(P)-binding domain superfamily
30 135 Pfam PF08240 Alcohol dehydrogenase GroES-like domain
30 135 InterPro IPR013154 Alcohol dehydrogenase-like, N-terminal
4 175 SUPERFAMILY SSF50129 GroES-like
4 175 InterPro IPR011032 GroES-like superfamily
154 287 Gene3D G3DSA:3.40.50.720 -

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H3M2
AlphaFold full sequence Viewing
ColabFold KP13_31620
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
8 0.536
2 0.003
9 0.001
3 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 34.68 0.928
2 2.94 0.076
3 1.48 0.017

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

90 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
12H P11766 216.3 Da LogP 2.96 TPSA 57.5 ✓ Ro5 ✓ Clean C(CCCCCC(=O)O)CCCCCO
572 Q00796 301.4 Da LogP -1.10 TPSA 89.9 ✓ Ro5 ✓ Clean CN(C)S(=O)(=O)N1CCN(CC1)c2ccnc(n2)CO
AHE P11766 337.4 Da LogP -2.45 TPSA 179.1 1 viol. ✓ Clean C(CC(=O)N[C@@H](CSCO)C(=O)NCC(=O)O)[C@@H](C(=O)…
APR P11766 559.3 Da LogP -3.28 TPSA 291.5 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BMD P42328 87.1 Da LogP 0.27 TPSA 43.1 ✓ Ro5 ✓ Clean CCCC(=O)N
BO3 O96496 61.8 Da LogP -2.05 TPSA 60.7 ✓ Ro5 ✓ Clean B(O)(O)O
DAO P11766 200.3 Da LogP 3.99 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCC(=O)O
ETF P42328 100.0 Da LogP 0.54 TPSA 20.2 ✓ Ro5 ✓ Clean C(C(F)(F)F)O
ETX P39462 90.1 Da LogP 0.02 TPSA 29.5 ✓ Ro5 ✓ Clean CCOCCO
N2P P11766 102.2 Da LogP 0.07 TPSA 52.0 ✓ Ro5 ✓ Clean C(CCN)CCN

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.