Protein profile

KP13_01121

UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Genome: KpKP13

Gene: AHE42485.1 murA Structure source: AlphaFold + ColabFold UniProt A0A0H3GYZ6
Amino acids 419
Annotations 10
Features 17
PDB binders 18
Druggability 0.245

Overview

Basic information about this protein and its source genome.

Accession
KP13_01121
Gene
AHE42485.1 murA
Status
annotated
Amino acids
419
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
92.124
DEG E-value
0.0
Localization
Cytoplasmic
ColabFold pLDDT
96.35

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.245
Structure A0A0H3GYZ6
Pocket Pocket 22
P2Rank 0.952
Structure A0A0H3GYZ6
Pocket Pocket 1
ColabFold model
FPocket 0.161 · Pocket 5
P2Rank 0.947 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 609 / 4744 genomes with a hit
Normalized 0.128

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 9 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

9
  • GO:0008760 Catalysis of the reaction: phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine.
  • GO:0019277 The chemical reactions and pathways resulting in the formation of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
  • GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
  • GO:0016765 Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0051301 The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
  • GO:0071555 A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
  • GO:0009252 The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls and consisting of long glycan strands of alternating residues of beta-(1,4) linked N-acetylglucosamine and N-acetylmuramic acid, cross-linked by short peptides.
  • GO:0008360 Any process that modulates the surface configuration of a cell.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
2 417 PANTHER PTHR43783 UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE
1 418 SUPERFAMILY SSF55205 EPT/RTPC-like
1 418 InterPro IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
5 414 Gene3D G3DSA:3.65.10.10 Enolpyruvate transferase domain
5 414 InterPro IPR036968 Enolpyruvate transferase domain superfamily
6 406 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
6 406 InterPro IPR001986 Enolpyruvate transferase domain
1 416 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA].
1 416 InterPro IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
399 419 Coils Coil Coil
214 414 FunFam G3DSA:3.65.10.10:FF:000002 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
12 409 CDD cd01555 UdpNAET
12 409 InterPro IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1 415 NCBIfam TIGR01072 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1 415 InterPro IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
21 228 Gene3D G3DSA:3.65.10.10 Enolpyruvate transferase domain
21 228 InterPro IPR036968 Enolpyruvate transferase domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GYZ6
AlphaFold full sequence Viewing
ColabFold KP13_01121
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
22 0.245

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 25.7 0.908
2 1.08 0.007

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

74 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0V5 Q88P88 170.1 Da LogP -0.43 TPSA 104.1 ✓ Ro5 ✓ Clean C[C@H](C(=O)O)OP(=O)(O)O
2AN P33038 299.4 Da LogP 3.83 TPSA 66.4 ✓ Ro5 ✓ Clean c1ccc(cc1)Nc2cccc3c2c(ccc3)S(=O)(=O)O
EPU P33038 677.4 Da LogP -4.03 TPSA 332.2 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@]…
EPZ P33038 679.4 Da LogP -4.15 TPSA 332.2 3 viol. ✓ Clean C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]…
FFQ P33038 140.1 Da LogP -0.11 TPSA 77.8 ✓ Ro5 ✓ Clean CC[C@H](O)P(=O)(O)O
GG6 P45025 156.1 Da LogP -1.14 TPSA 98.0 ✓ Ro5 ✓ Clean C[C@@H]([C@@H](O)P(=O)(O)O)O
HAI P33038 100.2 Da LogP 0.56 TPSA 27.6 ✓ Ro5 ✓ Clean C1CCC(CC1)[NH3+]
MOE P33038 75.1 Da LogP -1.01 TPSA 32.3 ✓ Ro5 ✓ Clean COCC[O-]
PG0 P33038 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO
PO3 P0A749 79.0 Da LogP -1.64 TPSA 63.2 ✓ Ro5 ✓ Clean [O-][P-](=O)[O-]
TAV P33038 662.7 Da LogP 4.56 TPSA 184.4 1 viol. ✓ Clean CN([C@@H](CC(=O)O)C(=O)O)C(=O)c1cc(ccc1NS(=O)(=…
TET P0A749 793.4 Da LogP -4.77 TPSA 398.9 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@]…
TR9 P33038 156.1 Da LogP -0.28 TPSA 74.6 ✓ Ro5 ✓ Clean CC1=C(C(=O)C[C@@H](C1=O)O)O
UD1 P33038 607.4 Da LogP -4.65 TPSA 305.9 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@]…
UD2 P33038 607.4 Da LogP -4.65 TPSA 305.9 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O[P@@](…
UDA P33038 775.4 Da LogP -4.72 TPSA 398.9 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@]…
UPG P33038 566.3 Da LogP -4.79 TPSA 297.0 3 viol. ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
UPN P33038 677.4 Da LogP -4.03 TPSA 332.2 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O[P@](=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.