Protein profile

KP13_01084

peptidase C56 protein

Genome: KpKP13

Gene: AHE42523.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GYV3
Amino acids 178
Annotations 0
Features 15
PDB binders 16
Druggability 0.627

Overview

Basic information about this protein and its source genome.

Accession
KP13_01084
Gene
AHE42523.1
Status
annotated
Amino acids
178
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
27.848
Human E-value
2.99e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
96.25

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.627
Structure A0A0H3GYV3
Pocket Pocket 2
P2Rank 0.061
Structure A0A0H3GYV3
Pocket Pocket 1
ColabFold model
FPocket 0.421 · Pocket 5
P2Rank 0.138 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 116 / 4744 genomes with a hit
Normalized 0.024

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
4 171 NCBIfam TIGR01382 DJ-1/PfpI/YhbO family deglycase/protease
4 171 InterPro IPR006286 Deglycase PfpI-like
1 170 SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like
1 170 InterPro IPR029062 Class I glutamine amidotransferase-like
7 178 ProSiteProfiles PS51273 Glutamine amidotransferase type 1 domain profile.
3 171 ProSiteProfiles PS51276 PfpI endopeptidase domain profile.
3 171 InterPro IPR006286 Deglycase PfpI-like
1 172 FunFam G3DSA:3.40.50.880:FF:000017 Type 1 glutamine amidotransferase
1 172 Gene3D G3DSA:3.40.50.880 -
1 172 InterPro IPR029062 Class I glutamine amidotransferase-like
2 172 PANTHER PTHR42733 DJ-1 PROTEIN
2 172 InterPro IPR006286 Deglycase PfpI-like
3 167 Pfam PF01965 DJ-1/PfpI family
3 167 InterPro IPR002818 DJ-1/PfpI
4 169 CDD cd03134 GATase1_PfpI_like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GYV3
AlphaFold full sequence Viewing
ColabFold KP13_01084
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.627
1 0.026
8 0.002
5 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 2.61 0.061

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

104 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2HA O59413 90.1 Da LogP -1.46 TPSA 57.5 ✓ Ro5 ✓ Clean C(C(=O)CO)O
72R Q99497 165.1 Da LogP 0.96 TPSA 46.2 ✓ Ro5 ✓ Clean c1cc2c(cc1F)C(=O)C(=O)N2
72S Q99497 161.2 Da LogP 1.13 TPSA 46.2 ✓ Ro5 ✓ Clean Cc1cccc2c1NC(=O)C2=O
72T Q99497 215.1 Da LogP 1.84 TPSA 46.2 ✓ Ro5 ✓ Clean c1cc2c(c(c1)C(F)(F)F)NC(=O)C2=O
72U Q99497 205.2 Da LogP 0.61 TPSA 72.5 ✓ Ro5 ✓ Clean COC(=O)c1cccc2c1NC(=O)C2=O
72V Q99497 161.2 Da LogP 0.85 TPSA 37.4 ✓ Ro5 ✓ Clean CN1c2ccccc2C(=O)C1=O
73D Q99497 175.2 Da LogP 1.24 TPSA 37.4 ✓ Ro5 ✓ Clean CCN1c2ccccc2C(=O)C1=O
73G Q99497 261.3 Da LogP 1.56 TPSA 63.7 ✓ Ro5 ✓ Clean CCCCOC(=O)CN1c2ccccc2C(=O)C1=O
7MT O59413 556.4 Da LogP -2.25 TPSA 64.8 1 viol. ✓ Clean c1cc2[n+]3c(c1)C(=O)O[Tb]34567[n+]8c(cccc8C(=O)…
DTT Q99497 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
ISN Q99497 147.1 Da LogP 0.82 TPSA 46.2 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=O)C(=O)N2
MLA Q99497 104.1 Da LogP -0.45 TPSA 74.6 ✓ Ro5 ✓ Clean C(C(=O)O)C(=O)O
MLI O59413 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
P15 Q99497 296.4 Da LogP -0.29 TPSA 75.6 ✓ Ro5 ✓ Clean COCCOCCOCCOCCOCCOCCO
P4C Q99497 324.4 Da LogP -0.72 TPSA 92.7 ✓ Ro5 ✓ Clean C(COCCOCCOCCOCCOCCOCC=O)O
TLA Q99497 150.1 Da LogP -2.12 TPSA 115.1 ✓ Ro5 ✓ Clean [C@@H]([C@H](C(=O)O)O)(C(=O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.