Protein profile

KP13_02874

D-galactonate transporter family protein

Genome: KpKP13

Gene: AHE42556.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GXW9
Amino acids 433
Annotations 4
Features 54
PDB binders 1
Druggability 0.659

Overview

Basic information about this protein and its source genome.

Accession
KP13_02874
Gene
AHE42556.1
Status
annotated
Amino acids
433
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
26.054
Human E-value
5.58e-11
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
84.52

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.659
Structure A0A0H3GXW9
Pocket Pocket 1
P2Rank 0.964
Structure A0A0H3GXW9
Pocket Pocket 1
ColabFold model
FPocket 0.845 · Pocket 11
P2Rank 0.947 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 97 / 4744 genomes with a hit
Normalized 0.02

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015134 Enables the transfer of hexuronates from one side of a membrane to the other. A hexuronate is any monocarboxylic acid derived from a hexose by oxidation of C-6.

Sequence Features

Domain/signature hits from InterPro and related databases.

54 records
Show feature table
Start End DB Term Name
25 32 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
160 164 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
327 349 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
13 24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
359 381 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 12 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
386 391 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
293 314 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
388 410 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 32 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
1 199 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
1 199 InterPro IPR036259 MFS transporter superfamily
76 96 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
288 292 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
186 264 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
7 24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
368 385 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
17 411 NCBIfam TIGR00893 D-galactonate transporter
47 69 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
268 290 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
102 122 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
349 367 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
215 422 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
215 422 InterPro IPR036259 MFS transporter superfamily
134 159 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
48 69 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
76 98 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
11 416 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile.
11 416 InterPro IPR020846 Major facilitator superfamily domain
214 422 FunFam G3DSA:1.20.1250.20:FF:000173 Hexuronate transporter
265 287 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
165 185 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
7 411 PANTHER PTHR11662 SOLUTE CARRIER FAMILY 17
8 411 CDD cd17319 MFS_ExuT_GudP_like
137 159 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
33 47 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
315 325 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
326 348 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
16 287 Pfam PF07690 Major Facilitator Superfamily
16 287 InterPro IPR011701 Major facilitator superfamily
301 421 Pfam PF07690 Major Facilitator Superfamily
301 421 InterPro IPR011701 Major facilitator superfamily
413 433 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
97 101 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
102 124 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
305 322 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
123 133 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
70 75 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 199 FunFam G3DSA:1.20.1250.20:FF:000036 Hexuronate transporter
3 414 SUPERFAMILY SSF103473 MFS general substrate transporter
3 414 InterPro IPR036259 MFS transporter superfamily
163 185 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
392 412 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 32 Phobius SIGNAL_PEPTIDE Signal peptide region

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GXW9
AlphaFold full sequence Viewing
ColabFold KP13_02874
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.659
16 0.58

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 28.93 0.928
2 2.41 0.065
3 2.35 0.061
4 2.15 0.051
5 1.9 0.038

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

81 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
J0M J7QAK3 196.2 Da LogP -3.49 TPSA 138.5 1 viol. ✓ Clean C([C@H]([C@@H]([C@@H]([C@H](C(=O)O)O)O)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.