Protein profile

KP13_02783

1-acyl-sn-glycerol-3-phosphate acyltransferase

Genome: KpKP13

Gene: AHE42648.1 plsC Structure source: AlphaFold + ColabFold UniProt A6TE11
Amino acids 220
Annotations 4
Features 14
PDB binders 1
Druggability 0.728

Overview

Basic information about this protein and its source genome.

Accession
KP13_02783
Gene
AHE42648.1 plsC
Status
annotated
Amino acids
220
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
30.288
Human E-value
1.15e-31
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
88.128
DEG E-value
4.23e-148
Localization
CytoplasmicMembrane
ColabFold pLDDT
88.88

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.728
Structure A6TE11
Pocket Pocket 2
P2Rank 0.914
Structure A6TE11
Pocket Pocket 1
ColabFold model
FPocket 0.789 · Pocket 9
P2Rank 0.924 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 137 / 4744 genomes with a hit
Normalized 0.029

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0016746 Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
  • GO:0003841 Catalysis of the reaction: acyl-CoA + 1-acyl-sn-glycerol-3-phosphate = CoA + 1,2-diacyl-sn-glycerol-3-phosphate.
  • GO:0008654 The chemical reactions and pathways resulting in the formation of a phospholipid, a lipid containing phosphoric acid as a mono- or diester.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
1 25 Phobius SIGNAL_PEPTIDE Signal peptide region
10 20 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
25 155 NCBIfam TIGR00530 1-acylglycerol-3-phosphate O-acyltransferase
25 155 InterPro IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase
42 157 SMART SM00563 plsc_2
42 157 InterPro IPR002123 Phospholipid/glycerol acyltransferase
4 215 PANTHER PTHR10434 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
21 25 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
23 197 CDD cd07989 LPLAT_AGPAT-like
35 155 Pfam PF01553 Acyltransferase
35 155 InterPro IPR002123 Phospholipid/glycerol acyltransferase
26 220 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
2 215 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase
1 9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A6TE11
AlphaFold full sequence Viewing
ColabFold KP13_02783
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.728
1 0.507
13 0.382
3 0.264

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 24.61 0.9
2 3.6 0.134
3 1.29 0.014

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

132 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
DD9 Q9X219 128.3 Da LogP 3.76 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCC

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.