Protein profile

KP13_02762

putative aminotransferase

Genome: KpKP13

Gene: AHE42669.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GTC3
Amino acids 393
Annotations 5
Features 11
PDB binders 18
Druggability 0.557

Overview

Basic information about this protein and its source genome.

Accession
KP13_02762
Gene
AHE42669.1
Status
annotated
Amino acids
393
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
29.949
Human E-value
1.25e-23
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
95.35

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.557
Structure A0A0H3GTC3
Pocket Pocket 23
P2Rank 0.742
Structure A0A0H3GTC3
Pocket Pocket 1
ColabFold model
FPocket 0.103 · Pocket 6
P2Rank 0.742 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 47 / 4744 genomes with a hit
Normalized 0.01

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0030170 Binding to pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
  • GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
  • GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
  • GO:0008483 Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
  • GO:1901605 The chemical reactions and pathways involving an alpha-amino acid.

Sequence Features

Domain/signature hits from InterPro and related databases.

11 records
Show feature table
Start End DB Term Name
5 392 PANTHER PTHR42790 AMINOTRANSFERASE
31 391 CDD cd00609 AAT_like
65 288 Gene3D G3DSA:3.40.640.10 -
65 288 InterPro IPR015421 Pyridoxal phosphate-dependent transferase, major domain
57 389 Pfam PF00155 Aminotransferase class I and II
57 389 InterPro IPR004839 Aminotransferase, class I/classII
16 391 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1
16 391 InterPro IPR015422 Pyridoxal phosphate-dependent transferase, small domain
5 391 SUPERFAMILY SSF53383 PLP-dependent transferases
5 391 InterPro IPR015424 Pyridoxal phosphate-dependent transferase
65 288 FunFam G3DSA:3.40.640.10:FF:000053 Aminotransferase, class I

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GTC3
AlphaFold full sequence Viewing
ColabFold KP13_02762
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.076
13 0.009
9 0.001
8 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 18.04 0.742
2 6.64 0.284

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

168 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
09M Q8N5Z0 407.3 Da LogP 1.87 TPSA 154.1 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3ccccc3N(C2=O)O…
0K5 Q8N5Z0 499.4 Da LogP 3.66 TPSA 163.4 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3cc(ccc3N(C2=O)…
0KE Q8N5Z0 437.3 Da LogP 1.88 TPSA 163.4 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3ccc(cc3N(C2=O)…
0L0 Q8N5Z0 527.5 Da LogP 3.47 TPSA 163.4 1 viol. ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3cc(c(cc3N(C2=O…
0LD Q8N5Z0 473.4 Da LogP 2.05 TPSA 172.0 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3cn(nc3N(C2=O)O…
0X1 Q8N5Z0 523.4 Da LogP 3.60 TPSA 171.3 1 viol. ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=Cc3cc(ccc3N4C2=NN…
3EE O57946 207.2 Da LogP 0.50 TPSA 97.5 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)CC(=O)C(=O)O)N
7AR Q8N5Z0 364.2 Da LogP 3.29 TPSA 74.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C[C@H](C(=O)O)N2C(=O)c3cc(c(cc3C2=O)C…
AKG O57946 146.1 Da LogP -0.50 TPSA 91.7 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)C(=O)O
BF5 Q8N5Z0 363.4 Da LogP -0.55 TPSA 105.3 ✓ Ro5 ✓ Clean C[C@H]1COC2=C3N1C=C(C(=C3CC(=C2N4CCN(CC4)N)F)O)…
G9A O57946 130.1 Da LogP 0.10 TPSA 74.6 ✓ Ro5 ✓ Clean C(/C=C/C(=O)O)C(=O)O
KYA O57946 189.2 Da LogP 1.64 TPSA 70.4 ✓ Ro5 ✓ Clean c1ccc2c(c1)c(cc(n2)C(=O)O)O
KYN Q8N5Z0 208.2 Da LogP 0.25 TPSA 106.4 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)C[C@@H](C(=O)O)N)N
MVQ Q8N5Z0 453.6 Da LogP 2.57 TPSA 89.4 ✓ Ro5 ✓ Clean CN1C(=O)c2c(sc(n2)N3CCC[C@@H]3C(=O)NCc4ccccc4)N…
MVT Q8N5Z0 441.5 Da LogP 4.74 TPSA 72.0 ✓ Ro5 ✓ Clean CC(C)[C@@H](Cc1nnc(s1)NS(=O)(=O)c2cc(cc(c2)F)F)…
N5F Q72LL6 392.3 Da LogP 0.50 TPSA 186.5 1 viol. ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCCC(=O)O)C(=…
PGU Q72LL6 378.3 Da LogP 0.11 TPSA 186.5 1 viol. ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCC(=O)O)C(=O…
PMP Q8N5Z0 248.2 Da LogP 0.16 TPSA 125.9 ✓ Ro5 ✓ Clean Cc1c(c(c(cn1)COP(=O)(O)O)CN)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.