Protein profile

KP13_02759

Glucose/ribitol dehydrogenase family protein

Genome: KpKP13

Gene: AHE42672.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GXP5
Amino acids 200
Annotations 1
Features 21
PDB binders 7
Druggability 0.175

Overview

Basic information about this protein and its source genome.

Accession
KP13_02759
Gene
AHE42672.1
Status
annotated
Amino acids
200
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
24.865
Human E-value
7.55e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
98.08

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.175
Structure A0A0H3GXP5
Pocket Pocket 2
P2Rank 0.831
Structure A0A0H3GXP5
Pocket Pocket 1
ColabFold model
FPocket 0.188 · Pocket 4
P2Rank 0.795 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 67 / 4744 genomes with a hit
Normalized 0.014

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

21 records
Show feature table
Start End DB Term Name
1 2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
18 200 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
2 162 PANTHER PTHR43477 DIHYDROANTICAPSIN 7-DEHYDROGENASE
3 198 CDD cd11731 Lin1944_like_SDR_c
1 198 Gene3D G3DSA:3.40.50.720 -
125 144 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
125 144 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
2 19 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
2 19 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
145 162 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
145 162 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
99 115 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
99 115 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
54 65 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
54 65 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
3 12 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
13 17 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
1 199 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
1 199 InterPro IPR036291 NAD(P)-binding domain superfamily
1 17 Phobius SIGNAL_PEPTIDE Signal peptide region
32 163 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GXP5
AlphaFold full sequence Viewing
ColabFold KP13_02759
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 15.29 0.75
2 2.58 0.074

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

106 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
45N Q9BPX1 219.3 Da LogP 2.45 TPSA 30.5 ✓ Ro5 ✓ Clean c1cc2c(cc1CNC3CCCC3)OCO2
9MH Q9BPX1 339.3 Da LogP 2.21 TPSA 105.3 ✓ Ro5 ✓ Clean c1cc(cc2c1ccc(n2)C(=O)c3ccc(c(c3)O)F)NC(=O)CN
B3P B3R6T4 282.3 Da LogP -4.01 TPSA 145.4 1 viol. ✓ Clean C(CNC(CO)(CO)CO)CNC(CO)(CO)CO
J3Z Q9BPX1 270.4 Da LogP 3.82 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)O
QFT Q9BPX1 157.1 Da LogP 1.44 TPSA 63.4 ✓ Ro5 ✓ Clean c1cc(c(cc1N(=O)=O)O)F
QFZ Q9BPX1 184.1 Da LogP 2.09 TPSA 20.2 ✓ Ro5 ✓ Clean c1(c(c(c(c(c1F)F)F)F)F)O
SAL Q9BPX1 138.1 Da LogP 1.09 TPSA 57.5 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.