Protein profile

KP13_02160

Phosphoglycerate kinase

Genome: KpKP13

Gene: pgk AHE42732.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3H2Q3
Amino acids 387
Annotations 2
Features 36
PDB binders 3
Druggability 0.876

Overview

Basic information about this protein and its source genome.

Accession
KP13_02160
Gene
pgk AHE42732.1
Status
annotated
Amino acids
387
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
37.956
Human E-value
6.909999999999998e-76
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
96.382
DEG E-value
0.0
Localization
Cytoplasmic
ColabFold pLDDT
96.49

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.876
Structure A0A0H3H2Q3
Pocket Pocket 2
P2Rank 0.613
Structure A0A0H3H2Q3
Pocket Pocket 1
ColabFold model
FPocket 0.51 · Pocket 1
P2Rank 0.696 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 304 / 4744 genomes with a hit
Normalized 0.064

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0004618 Catalysis of the reaction: 3-phospho-D-glycerate + ATP = 3-phospho-D-glyceroyl phosphate + ADP + H+.
  • GO:0006096 The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.

Sequence Features

Domain/signature hits from InterPro and related databases.

36 records
Show feature table
Start End DB Term Name
31 53 PRINTS PR00477 Phosphoglycerate kinase family signature
31 53 InterPro IPR001576 Phosphoglycerate kinase
336 347 PRINTS PR00477 Phosphoglycerate kinase family signature
336 347 InterPro IPR001576 Phosphoglycerate kinase
132 154 PRINTS PR00477 Phosphoglycerate kinase family signature
132 154 InterPro IPR001576 Phosphoglycerate kinase
359 376 PRINTS PR00477 Phosphoglycerate kinase family signature
359 376 InterPro IPR001576 Phosphoglycerate kinase
10 26 PRINTS PR00477 Phosphoglycerate kinase family signature
10 26 InterPro IPR001576 Phosphoglycerate kinase
163 185 PRINTS PR00477 Phosphoglycerate kinase family signature
163 185 InterPro IPR001576 Phosphoglycerate kinase
186 205 PRINTS PR00477 Phosphoglycerate kinase family signature
186 205 InterPro IPR001576 Phosphoglycerate kinase
104 119 PRINTS PR00477 Phosphoglycerate kinase family signature
104 119 InterPro IPR001576 Phosphoglycerate kinase
303 328 PRINTS PR00477 Phosphoglycerate kinase family signature
303 328 InterPro IPR001576 Phosphoglycerate kinase
169 373 FunFam G3DSA:3.40.50.1260:FF:000001 Phosphoglycerate kinase
5 384 PANTHER PTHR11406 PHOSPHOGLYCERATE KINASE
5 384 InterPro IPR001576 Phosphoglycerate kinase
3 383 SUPERFAMILY SSF53748 Phosphoglycerate kinase
3 383 InterPro IPR036043 Phosphoglycerate kinase superfamily
165 373 Gene3D G3DSA:3.40.50.1260 -
165 373 InterPro IPR015824 Phosphoglycerate kinase, N-terminal
8 383 Hamap MF_00145 Phosphoglycerate kinase [pgk].
8 383 InterPro IPR001576 Phosphoglycerate kinase
8 381 Gene3D G3DSA:3.40.50.1260 -
8 381 InterPro IPR015824 Phosphoglycerate kinase, N-terminal
7 168 FunFam G3DSA:3.40.50.1260:FF:000002 Phosphoglycerate kinase
15 25 ProSitePatterns PS00111 Phosphoglycerate kinase signature.
15 25 InterPro IPR015911 Phosphoglycerate kinase, conserved site
1 387 PIRSF PIRSF000724 Pgk
1 387 InterPro IPR001576 Phosphoglycerate kinase
6 373 Pfam PF00162 Phosphoglycerate kinase
6 373 InterPro IPR001576 Phosphoglycerate kinase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H2Q3
AlphaFold full sequence Viewing
ColabFold KP13_02160
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.876

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 9.99 0.537
2 2.11 0.048
3 1.91 0.039

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

153 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PG P36204 186.1 Da LogP -1.46 TPSA 124.3 ✓ Ro5 ✓ Clean C([C@H](C(=O)O)O)OP(=O)(O)O
ANP Q04LZ5 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BTB Q81X75 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.