Protein profile

KP13_02286

Thymidylate synthase

Genome: KpKP13

Gene: AHE42858.1 thyA Structure source: AlphaFold + ColabFold UniProt A0A0H3GX29
Amino acids 264
Annotations 7
Features 28
PDB binders 33
Druggability 0.307

Overview

Basic information about this protein and its source genome.

Accession
KP13_02286
Gene
AHE42858.1 thyA
Status
annotated
Amino acids
264
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
50.709
Human E-value
8.93e-96
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
93.939
DEG E-value
0.0
Localization
Cytoplasmic
ColabFold pLDDT
98.17

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.307
Structure A0A0H3GX29
Pocket Pocket 13
P2Rank 0.956
Structure A0A0H3GX29
Pocket Pocket 1
ColabFold model
FPocket 0.721 · Pocket 9
P2Rank 0.965 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 1091 / 4744 genomes with a hit
Normalized 0.23

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 6 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

6
  • GO:0016741 Catalysis of the transfer of a one-carbon group from one compound (donor) to another (acceptor).
  • GO:0004799 Catalysis of the reaction: 5,10-methylenetetrahydrofolate + dUMP = 7,8-dihydrofolate + thymidylate.
  • GO:0006231 The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0006235 The chemical reactions and pathways resulting in the formation of dTTP, deoxyribosylthymine triphosphate.
  • GO:0032259 The process in which a methyl group is covalently attached to a molecule.

Sequence Features

Domain/signature hits from InterPro and related databases.

28 records
Show feature table
Start End DB Term Name
1 264 Hamap MF_00008 Thymidylate synthase [thyA].
1 264 InterPro IPR000398 Thymidylate synthase
1 264 FunFam G3DSA:3.30.572.10:FF:000001 Thymidylate synthase
84 264 NCBIfam TIGR03284 thymidylate synthase
84 264 InterPro IPR000398 Thymidylate synthase
2 85 NCBIfam TIGR03284 thymidylate synthase
2 85 InterPro IPR000398 Thymidylate synthase
126 154 ProSitePatterns PS00091 Thymidylate synthase active site.
126 154 InterPro IPR020940 Thymidylate synthase, active site
2 264 Pfam PF00303 Thymidylate synthase
2 264 InterPro IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain
3 215 CDD cd00351 TS_Pyrimidine_HMase
3 215 InterPro IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain
115 134 PRINTS PR00108 Thymidylate synthase family signature
115 134 InterPro IPR000398 Thymidylate synthase
197 214 PRINTS PR00108 Thymidylate synthase family signature
197 214 InterPro IPR000398 Thymidylate synthase
159 185 PRINTS PR00108 Thymidylate synthase family signature
159 185 InterPro IPR000398 Thymidylate synthase
141 156 PRINTS PR00108 Thymidylate synthase family signature
141 156 InterPro IPR000398 Thymidylate synthase
42 63 PRINTS PR00108 Thymidylate synthase family signature
42 63 InterPro IPR000398 Thymidylate synthase
2 264 PANTHER PTHR11548 THYMIDYLATE SYNTHASE 1
2 264 InterPro IPR045097 Thymidylate synthase/dCMP hydroxymethylase
1 264 SUPERFAMILY SSF55831 Thymidylate synthase/dCMP hydroxymethylase
1 264 InterPro IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily
1 264 Gene3D G3DSA:3.30.572.10 Thymidylate synthase/dCMP hydroxymethylase domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GX29
AlphaFold full sequence Viewing
ColabFold KP13_02286
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
13 0.307

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 33.0 0.945

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

183 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
14C P00469 272.7 Da LogP 2.84 TPSA 50.3 ✓ Ro5 ✓ Clean Cc1cccc2c1C(=O)N(C2=O)c3ccnc(c3)Cl
1JY P0A884 647.6 Da LogP 0.94 TPSA 239.3 2 viol. ✓ Clean C#CCN(c1ccc(cc1)C(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O…
2BR P0A884 173.0 Da LogP 2.15 TPSA 20.2 ✓ Ro5 ✓ Clean c1ccc(c(c1)O)Br
C2F P9WFR9 459.5 Da LogP -0.26 TPSA 202.8 1 viol. ✓ Clean C[N@@]1[C@H](CNC2=C1C(=O)NC(=N2)N)CNc3ccc(cc3)C…
CF9 P0A886 335.3 Da LogP 3.50 TPSA 95.7 ✓ Ro5 ✓ Clean c1cc2c(ccc3c2c(c1)C(=O)O3)OC(=O)c4ccc(cc4)[N+](…
D16 P0A884 458.5 Da LogP 1.98 TPSA 152.7 ✓ Ro5 ✓ Clean CC1=NC(=O)c2cc(ccc2N1)CN(C)c3ccc(s3)C(=O)N[C@@H…
DDU P0A884 212.2 Da LogP -0.80 TPSA 84.3 ✓ Ro5 ✓ Clean C[C@@H]1[C@H](C[C@@H](O1)N2C=CC(=O)NC2=O)O
DHF P0A884 443.4 Da LogP 0.01 TPSA 211.9 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCC2=NC3=…
DTT P0A884 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
DTU P0A884 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@H]([C@H](CS)O)O)S
DUR P0A884 228.2 Da LogP -1.82 TPSA 104.6 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO)O
F89 P0A884 500.5 Da LogP 3.27 TPSA 152.7 1 viol. ✓ Clean CC1=Nc2ccc3ccc(cc3c2C(=O)N1)CNc4ccc5c(c4)CN(C5=…
FFO Q834R3 473.4 Da LogP -0.73 TPSA 219.8 1 viol. ✓ Clean c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2CNC3=C(N2C…
FGT P07607 318.3 Da LogP 3.56 TPSA 66.8 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=O)OC2(c3ccc(cc3)O)c4ccc(cc4)O
GA9 P0A884 560.6 Da LogP 6.89 TPSA 66.8 2 viol. ✓ Clean c1cc2c(ccc3c2c(c1)C(OC3=O)(c4ccc(c(c4)Br)O)c5cc…
LY3 P0A884 451.4 Da LogP -0.05 TPSA 208.4 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)N[C@@H…
LYA P9WFR9 427.4 Da LogP 0.67 TPSA 191.3 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H…
LYB P0A884 814.8 Da LogP -1.28 TPSA 390.5 3 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)N[C@@H…
LYD P0A884 397.4 Da LogP 1.46 TPSA 154.0 ✓ Ro5 ✓ Clean CC(C)[C@@H](C(=O)O)NC(=O)c1ccc(cc1)CCc2c[nH]c3c…
MEF P0A884 457.4 Da LogP -0.52 TPSA 194.0 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)[N@]2C[C@…
MTX P0A884 454.4 Da LogP 0.27 TPSA 210.5 ✓ Ro5 ✓ Clean CN(Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)N[C@@…
NDN P0A884 353.2 Da LogP -1.80 TPSA 194.2 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)[N+](=O)…
NDU P0A884 355.2 Da LogP -2.23 TPSA 188.8 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](O[C@H]1N2CC(C(=O)NC2=O)[N+](=O)[…
NOH P07607 323.2 Da LogP -1.20 TPSA 163.4 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)NO)COP(=O)(…
PFG P0A884 864.8 Da LogP -0.76 TPSA 377.9 3 viol. ✓ Clean C#CCN(Cc1ccc2c(c1)C(=O)N=C(N2)N)c3ccc(cc3)C(=O)…
SPM P9WFR9 202.3 Da LogP -0.36 TPSA 76.1 ✓ Ro5 ✓ Clean C(CCNCCCN)CNCCCN
SS7 Q834R3 367.4 Da LogP 3.29 TPSA 72.9 ✓ Ro5 ✓ Clean Cc1cc(cc(c1OC[C@H](C)N2C(=O)c3ccccc3C2=O)C)OC(=…
TGQ P07607 459.5 Da LogP -0.26 TPSA 202.8 1 viol. ✓ Clean CN(C[C@H]1CNC2=C(N1)C(=O)N=C(N2)N)c3ccc(cc3)C(=…
THG P0A884 445.4 Da LogP -0.28 TPSA 211.6 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC[C@H]2C…
TMF P00469 455.4 Da LogP -0.23 TPSA 194.3 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)N[C@H](CCC(=O)O)C(=O)O)[N@@]2C[C@…
TP2 P0A884 328.5 Da LogP 1.19 TPSA 66.5 ✓ Ro5 ✓ Clean Cc1ccc(cc1)S(=O)(=O)[N@]2CCC[C@@H]2C(=O)NCCS
TPR P0A884 269.3 Da LogP 1.23 TPSA 74.7 ✓ Ro5 ✓ Clean Cc1ccc(cc1)S(=O)(=O)[N@]2CCC[C@@H]2C(=O)O
UMC P0A884 310.2 Da LogP -1.49 TPSA 145.6 ✓ Ro5 ✓ Clean C1CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.