Protein profile

KP13_02347

putative lipoprotein

Genome: KpKP13

Gene: AHE42917.1 Structure source: Experimental + ColabFold UniProt A6TD90
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Amino acids 76
Annotations 0
Features 19
PDB binders 0

Overview

Basic information about this protein and its source genome.

Accession
KP13_02347
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE42917.1
Status
annotated
Amino acids
76
Structure source
Experimental + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
85.88

Selected Druggability evidence

PDB experimental structure

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0
Structure 5CAI
Pocket –
P2Rank
Structure 5CAI
Pocket No pockets
ColabFold model
FPocket 0.492 · Pocket 2
P2Rank 0.003 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 93 / 4744 genomes with a hit
Normalized 0.02

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

19 records
Show feature table
Start End DB Term Name
5 73 NCBIfam NF033216 YgdI/YgdR family lipoprotein
5 73 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
1 5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
23 74 SUPERFAMILY SSF50182 Sm-like ribonucleoproteins
23 74 InterPro IPR010920 LSM domain superfamily
6 17 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
18 22 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
21 76 Gene3D G3DSA:2.30.30.100 -
7 29 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
25 71 Pfam PF06004 Bacterial protein of unknown function (DUF903)
25 71 InterPro IPR047807 Lipoprotein YgdI/YgdR-like, SH3-like domain
3 73 PANTHER PTHR37011 POT FAMILY PEPTIDE TRANSPORT PROTEIN-RELATED
3 73 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
1 21 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 23 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
1 20 SignalP_EUK SignalP-noTM SignalP-noTM
1 22 Phobius SIGNAL_PEPTIDE Signal peptide region
23 76 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 22 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 5CAI
X-ray 20.00 Å - —
PDBe RCSB PDBj File
Viewing
ColabFold KP13_02347
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
23 0.419

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 7.11 0.369
2 6.96 0.36