Protein profile

KP13_02359

hypothetical protein

Genome: KpKP13

Gene: AHE42930.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GXJ3
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Amino acids 647
Annotations 8
Features 39
PDB binders 6
Druggability 0.134

Overview

Basic information about this protein and its source genome.

Accession
KP13_02359
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE42930.1
Status
annotated
Amino acids
647
Structure source
AlphaFold + ColabFold
GO
GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. GO:0042626 Primary active transporter of a solute across a membrane, via the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of a substance across a membrane. The transport protein may be transiently phosphorylated (P-type transporters), or not (ABC-type transporters and other families of transporters). Primary active transport occurs up the solute's concentration gradient and is driven by a primary energy source. GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it. GO:0008134 Binding to a transcription factor, a protein required to initiate or regulate transcription.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
84.83

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.134
Structure A0A0H3GXJ3
Pocket Pocket 39
P2Rank 0.829
Structure A0A0H3GXJ3
Pocket Pocket 1
ColabFold model
FPocket 0.779 · Pocket 10
P2Rank 0.666 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 21 / 4744 genomes with a hit
Normalized 0.004

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
  • GO:0042626 Primary active transporter of a solute across a membrane, via the reaction: ATP + H2O = ADP + phosphate, to directly drive the transport of a substance across a membrane. The transport protein may be transiently phosphorylated (P-type transporters), or not (ABC-type transporters and other families of transporters). Primary active transport occurs up the solute's concentration gradient and is driven by a primary energy source.
  • GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0008134 Binding to a transcription factor, a protein required to initiate or regulate transcription.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0030313 An envelope that surrounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present.

Sequence Features

Domain/signature hits from InterPro and related databases.

39 records
Show feature table
Start End DB Term Name
351 631 NCBIfam TIGR01728 aliphatic sulfonate ABC transporter substrate-binding protein
351 631 InterPro IPR010067 Aliphatic sulfonates-binding protein
97 112 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature.
97 112 InterPro IPR025943 Sigma-54 interaction domain, ATP-binding site 2
224 233 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature.
224 233 InterPro IPR025944 Sigma-54 interaction domain, conserved site
183 258 Gene3D G3DSA:1.10.8.60 -
18 175 Pfam PF00158 Sigma-54 interaction domain
18 175 InterPro IPR002078 RNA polymerase sigma factor 54 interaction domain
15 328 PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN
31 175 SMART SM00382 AAA_5
31 175 InterPro IPR003593 AAA+ ATPase domain
35 48 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature.
35 48 InterPro IPR025662 Sigma-54 interaction domain, ATP-binding site 1
279 327 Gene3D G3DSA:1.10.10.60 -
350 581 SMART SM00062 AABind_6
350 581 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
308 328 PRINTS PR01590 FIS bacterial regulatory protein HTH signature
308 328 InterPro IPR002197 DNA binding HTH domain, Fis-type
291 308 PRINTS PR01590 FIS bacterial regulatory protein HTH signature
291 308 InterPro IPR002197 DNA binding HTH domain, Fis-type
291 319 Pfam PF02954 Bacterial regulatory protein, Fis family
291 319 InterPro IPR002197 DNA binding HTH domain, Fis-type
224 327 SUPERFAMILY SSF46689 Homeodomain-like
224 327 InterPro IPR009057 Homeobox-like domain superfamily
350 624 CDD cd13557 PBP2_SsuA
30 178 CDD cd00009 AAA
431 530 Gene3D G3DSA:3.40.190.10 -
353 625 Gene3D G3DSA:3.40.190.10 -
10 182 Gene3D G3DSA:3.40.50.300 -
10 182 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
390 554 Pfam PF09084 NMT1/THI5 like
390 554 InterPro IPR015168 SsuA/THI5-like
15 240 ProSiteProfiles PS50045 Sigma-54 interaction domain profile.
15 240 InterPro IPR002078 RNA polymerase sigma factor 54 interaction domain
12 181 FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC
15 253 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
15 253 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
349 583 SUPERFAMILY SSF53850 Periplasmic binding protein-like II

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GXJ3
AlphaFold — — full sequence — Viewing
ColabFold KP13_02359
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 11.01 0.59
2 7.12 0.37
3 3.59 0.133
4 2.25 0.055
5 1.75 0.032

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
08T
4LZZ
O67198 — — — [Be](OP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@…
5QT
5EP3
Q1ZS18 272.3 Da LogP 0.83 TPSA 99.9 ✓ Ro5 ✓ Clean CC(C)(C)COC(=O)CNC1=NNC(=O)NC1=S
AGS
5EXS
G3XCV0 523.2 Da LogP -1.51 TPSA 262.1 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP
4QHT
A0A0H3AHP1 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
AZU
5EP2
Q1ZS18 273.3 Da LogP 0.14 TPSA 104.9 ✓ Ro5 ✓ Clean CC(C)(C)COC(=O)CSC1=NNC(=O)NC1=O
C2E
5EXX
G3XCV0 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.