Protein profile

KP13_02447

Isopenicillin N synthase domain-containing protein

Genome: KpKP13

Gene: AHE43117.1 Structure source: AlphaFold + ColabFold UniProt A0A0C7KE07
Amino acids 355
Annotations 3
Features 14
PDB binders 32
Druggability 0.967

Overview

Basic information about this protein and its source genome.

Accession
KP13_02447
Gene
AHE43117.1
Status
annotated
Amino acids
355
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
88.88

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.967
Structure A0A0C7KE07
Pocket Pocket 1
P2Rank 0.97
Structure A0A0C7KE07
Pocket Pocket 1
ColabFold model
FPocket 0.997 · Pocket 1
P2Rank 0.971 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 11 / 4744 genomes with a hit
Normalized 0.002

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 2 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

2
  • GO:0102276 Catalysis of the reaction: 2-oxoglutarate(2-) + O2 + 2 H+ = ethene + 3 carbon dioxide + H2O.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
8 321 SUPERFAMILY SSF51197 Clavaminate synthase-like
178 281 ProSiteProfiles PS51471 Fe(2+) 2-oxoglutarate dioxygenase domain profile.
178 281 InterPro IPR005123 Oxoglutarate/iron-dependent dioxygenase
1 325 Gene3D G3DSA:2.60.120.330 -
1 325 InterPro IPR027443 Isopenicillin N synthase-like superfamily
34 51 PRINTS PR00682 Isopenicillin N synthase signature
269 287 PRINTS PR00682 Isopenicillin N synthase signature
155 171 PRINTS PR00682 Isopenicillin N synthase signature
242 268 PRINTS PR00682 Isopenicillin N synthase signature
182 279 Pfam PF03171 2OG-Fe(II) oxygenase superfamily
182 279 InterPro IPR044861 Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
11 134 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal
11 134 InterPro IPR026992 Non-haem dioxygenase N-terminal domain
9 303 PANTHER PTHR10209 OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0C7KE07
AlphaFold full sequence Viewing
ColabFold KP13_02447
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.967
3 0.265

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 36.37 0.955
2 1.86 0.037

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

82 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ACC P05326 382.5 Da LogP -1.80 TPSA 160.4 1 viol. ✓ Clean CSC[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H](…
ACV P05326 363.4 Da LogP -0.79 TPSA 158.8 1 viol. ✓ Clean CC(C)[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H…
ACW P05326 375.4 Da LogP -0.65 TPSA 158.8 1 viol. ✓ Clean CC1(CC1)[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C…
AKG Q96323 146.1 Da LogP -0.50 TPSA 91.7 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)C(=O)O
ASV P05326 347.4 Da LogP -1.26 TPSA 158.8 1 viol. ✓ Clean C=C[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H](…
BCV P05326 361.4 Da LogP -1.04 TPSA 158.8 1 viol. ✓ Clean C1CC1[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H…
DH2 Q96323 304.3 Da LogP 1.19 TPSA 127.5 ✓ Ro5 Alert c1cc(c(cc1[C@H]2[C@@H](C(=O)c3c(cc(cc3O2)O)O)O)…
DQH Q96323 304.3 Da LogP 1.19 TPSA 127.5 ✓ Ro5 Alert c1cc(c(cc1[C@@H]2[C@H](C(=O)c3c(cc(cc3O2)O)O)O)…
FYU Q7RYZ9 140.1 Da LogP -1.12 TPSA 82.8 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1)C=O
HCV P05326 377.5 Da LogP -0.40 TPSA 158.8 1 viol. ✓ Clean CC(C)[C@H](C(=O)O)NC(=O)[C@H](CCS)NC(=O)CCC[C@@…
HMU Q7RYZ9 142.1 Da LogP -1.44 TPSA 86.0 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1)CO
HYO Q6EZB3 289.4 Da LogP 1.93 TPSA 49.8 ✓ Ro5 ✓ Clean CN1[C@@H]2CC[C@H]1CC(C2)OC(=O)[C@H](CO)c3ccccc3
IP1 P05326 359.4 Da LogP -0.80 TPSA 150.0 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)CCC[C@@…
KKA P05326 278.3 Da LogP -0.54 TPSA 129.7 ✓ Ro5 ✓ Clean C(C[C@@H](C(=O)O)N)CC(=O)N[C@@H](CCS)C(=O)O
M11 P05326 378.4 Da LogP 0.02 TPSA 156.0 ✓ Ro5 ✓ Clean CC(C)[C@H](C(=O)O)OC(=O)[C@H]([C@H](C)S)NC(=O)C…
M2W P05326 379.4 Da LogP -1.41 TPSA 168.0 1 viol. ✓ Clean C[C@@H]([C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C…
M8F P05326 395.5 Da LogP -0.69 TPSA 158.8 1 viol. ✓ Clean CSCC[C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H]…
M9F P05326 395.5 Da LogP -0.70 TPSA 158.8 1 viol. ✓ Clean CC([C@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H](…
NAR Q96323 272.3 Da LogP 2.51 TPSA 87.0 ✓ Ro5 ✓ Clean c1cc(ccc1[C@@H]2CC(=O)c3c(cc(cc3O2)O)O)O
OGA Q6EZB3 147.1 Da LogP -1.73 TPSA 103.7 ✓ Ro5 ✓ Clean C(C(=O)O)NC(=O)C(=O)O
OXY P05326 32.0 Da LogP 0.07 TPSA 34.1 ✓ Ro5 ✓ Clean O=O
QUE Q96323 302.2 Da LogP 1.99 TPSA 131.4 ✓ Ro5 Alert c1cc(c(cc1C2=C(C(=O)c3c(cc(cc3O2)O)O)O)O)O
SIN Q96323 118.1 Da LogP -0.06 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)O
TDR Q7RYZ9 126.1 Da LogP -0.63 TPSA 65.7 ✓ Ro5 ✓ Clean CC1=CNC(=O)NC1=O
V10 P05326 382.5 Da LogP -0.66 TPSA 156.0 ✓ Ro5 ✓ Clean CSC[C@@H](C(=O)O)OC(=O)[C@H](CS)NC(=O)CCC[C@@H]…
VB1 P05326 349.4 Da LogP -1.04 TPSA 158.8 1 viol. ✓ Clean CC[C@@H](C(=O)O)NC(=O)[C@H](CS)NC(=O)CCC[C@@H](…
VVO P05326 66.9 Da LogP -0.12 TPSA 17.1 ✓ Ro5 ✓ Clean O=[V+2]
W2X P05326 392.4 Da LogP -0.88 TPSA 176.2 1 viol. ✓ Clean C[C@H](CO)[C@H](C(=O)O)OC(=O)[C@H](C(=C)S)NC(=O…
W6X P05326 112.1 Da LogP 1.14 TPSA 17.1 ✓ Ro5 ✓ Clean CC(=O)C(F)(F)F
W6Z P05326 130.1 Da LogP 0.25 TPSA 40.5 ✓ Ro5 ✓ Clean CC(C(F)(F)F)(O)O
WT4 P05326 395.5 Da LogP -0.69 TPSA 158.8 1 viol. ✓ Clean CSC[C@H](C(=O)O)NC(=O)[C@H](CCS)NC(=O)CCC[C@@H]…
YT3 B8M9K5 88.9 Da LogP -0.00 TPSA 0.0 ✓ Ro5 ✓ Clean [Y+3]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.