Protein profile

KP13_00835

D-xylose-proton symporter

Genome: KpKP13

Gene: AHE43199.1 xylE Structure source: AlphaFold + ColabFold UniProt A0A0H3GWT6
Amino acids 478
Annotations 5
Features 69
PDB binders 4
Druggability 0.873

Overview

Basic information about this protein and its source genome.

Accession
KP13_00835
Gene
AHE43199.1 xylE
Status
annotated
Amino acids
478
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
34.722
Human E-value
4.43e-22
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
89.94

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.873
Structure A0A0H3GWT6
Pocket Pocket 27
P2Rank 0.966
Structure A0A0H3GWT6
Pocket Pocket 1
ColabFold model
FPocket 0.737 · Pocket 25
P2Rank 0.959 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 148 / 4744 genomes with a hit
Normalized 0.031

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015293 Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.

Sequence Features

Domain/signature hits from InterPro and related databases.

69 records
Show feature table
Start End DB Term Name
335 357 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
357 361 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
288 306 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
35 53 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
141 164 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
396 418 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
54 75 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
82 104 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
267 287 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
16 460 Pfam PF00083 Sugar (and other) transporter
16 460 InterPro IPR005828 Major facilitator, sugar transporter-like
322 339 ProSitePatterns PS00216 Sugar transport proteins signature 1.
322 339 InterPro IPR005829 Sugar transporter, conserved site
362 385 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
12 34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
208 266 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
422 443 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
108 130 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
113 138 ProSitePatterns PS00217 Sugar transport proteins signature 2.
113 138 InterPro IPR005829 Sugar transporter, conserved site
304 326 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
76 81 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
334 356 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
5 237 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
5 237 InterPro IPR036259 MFS transporter superfamily
71 88 ProSitePatterns PS00216 Sugar transport proteins signature 1.
71 88 InterPro IPR005829 Sugar transporter, conserved site
16 451 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile.
16 451 InterPro IPR020846 Major facilitator superfamily domain
108 129 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
417 421 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
422 444 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
386 396 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
455 475 Coils Coil Coil
307 327 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
8 460 SUPERFAMILY SSF103473 MFS general substrate transporter
8 460 InterPro IPR036259 MFS transporter superfamily
165 183 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
328 333 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
362 384 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
130 140 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
103 107 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
397 416 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
142 164 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
12 34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
5 467 PANTHER PTHR48020 PROTON MYO-INOSITOL COTRANSPORTER
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
184 207 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
54 75 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
444 478 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
241 471 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
241 471 InterPro IPR036259 MFS transporter superfamily
184 206 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
15 449 CDD cd17359 MFS_XylE_like
5 457 NCBIfam TIGR00879 sugar porter family MFS transporter
5 457 InterPro IPR003663 Sugar/inositol transporter
5 466 FunFam G3DSA:1.20.1250.20:FF:000122 D-xylose transporter XylE
267 289 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
82 102 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
108 127 PRINTS PR00171 Sugar transporter signature
108 127 InterPro IPR003663 Sugar/inositol transporter
24 34 PRINTS PR00171 Sugar transporter signature
24 34 InterPro IPR003663 Sugar/inositol transporter
278 288 PRINTS PR00171 Sugar transporter signature
278 288 InterPro IPR003663 Sugar/inositol transporter
363 384 PRINTS PR00171 Sugar transporter signature
363 384 InterPro IPR003663 Sugar/inositol transporter
386 398 PRINTS PR00171 Sugar transporter signature
386 398 InterPro IPR003663 Sugar/inositol transporter

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GWT6
AlphaFold full sequence Viewing
ColabFold KP13_00835
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
27 0.873

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 33.83 0.948
2 2.18 0.052
3 1.92 0.039
4 1.75 0.032
5 1.49 0.021

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

154 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
37X P11169 568.7 Da LogP -0.45 TPSA 198.8 3 viol. ✓ Clean CCCCCCC(CCCCCC)(CO[C@@H]1[C@H]([C@@H]([C@H]([C@…
F00 P11169 332.4 Da LogP 1.11 TPSA 99.4 ✓ Ro5 ✓ Clean C=CCCCCCCCCCO[C@H]1[C@@H]([C@H](O[C@@H]([C@@H]1…
OLC P11169 356.5 Da LogP 4.92 TPSA 66.8 ✓ Ro5 ✓ Clean CCCCCCCC\C=C/CCCCCCCC(=O)OC[C@@H](CO)O
Y01 P11169 486.7 Da LogP 7.80 TPSA 63.6 1 viol. ✓ Clean CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.