Protein target profile

KP13_00855

3-mercaptopyruvate sulfurtransferase

Genome: KpKP13 Gene: sseA AHE43218.1 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3GWP1
Length 293
Pocket druggability 0.404
Direct ligand evidence 0 63 total records
Functional annotation 0 EC 4 GO
Target summary

Promising target candidate with multiple supporting evidence streams.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
41.404 Lower values reduce human off-target concern.
Human E-value
1.6199999999999998e-67
Gut microbiome similarity
1.7% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
0.0 Higher values support similarity to known essential genes.

Localization

Localization
Unknown

Structure confidence

ColabFold pLDDT
93.42 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.404
Structure A0A0H3GWP1
Pocket Pocket 11
P2Rank 0.676
Structure A0A0H3GWP1
Pocket Pocket 1
ColabFold model
FPocket 0.312 · Pocket 8
P2Rank 0.796 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 79 / 4744 genomes with a hit
Prevalence 1.7%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Sequence

Primary amino-acid sequence viewer.

MNNKTEAPMSTSFFVAADWLAEHIDDPEIQIIDARMAPAGQEALRDMAAEYRAGHVPNALFFDIEALSDHTSPLPHMMPRAEAFAVAMRELGVCSDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLEGWRRDELPLEQGMPEVAEGEFDVRFDPQQIKRLTDVLLVSHEGSAQIVDARPAARFNGQADEPRPGLRRGHIPGALNVPWTDLVINGELKTVDELNDIFLRQGVDFERPIIASCGSGVTAAVVVLALTTLGVNGVCLYDGSWSEWGARSDLPIEPAPAAP

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0004792 Catalysis of the reaction: thiosulfate + hydrogen cyanide = thiocyanate + sulfite + 2 H+.
  • GO:0016783 Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor).
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0016784 Catalysis of the reaction: 2-oxo-3-sulfanylpropanoate + [thioredoxin]-dithiol = [thioredoxin]-disulfide + hydrogen sulfide + pyruvate + H+. Note that 2-oxo-3-sulfanylpropanoate is also known as 3-mercaptopyruvate.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

28 records
Show feature table
Start End DB Term Name
174 288 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
174 288 InterPro IPR036873 Rhodanese-like domain superfamily
25 144 ProSiteProfiles PS50206 Rhodanese domain profile.
25 144 InterPro IPR001763 Rhodanese-like domain
168 280 CDD cd01449 TST_Repeat_2
159 289 Gene3D G3DSA:3.40.250.10 -
159 289 InterPro IPR036873 Rhodanese-like domain superfamily
8 160 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
8 160 InterPro IPR036873 Rhodanese-like domain superfamily
268 278 ProSitePatterns PS00683 Rhodanese C-terminal signature.
268 278 InterPro IPR001307 Thiosulphate sulfurtransferase, conserved site
15 141 SMART SM00450 rhod_4
15 141 InterPro IPR001763 Rhodanese-like domain
164 284 SMART SM00450 rhod_4
164 284 InterPro IPR001763 Rhodanese-like domain
10 158 FunFam G3DSA:3.40.250.10:FF:000015 Sulfurtransferase
159 289 FunFam G3DSA:3.40.250.10:FF:000001 Sulfurtransferase
7 158 Gene3D G3DSA:3.40.250.10 -
7 158 InterPro IPR036873 Rhodanese-like domain superfamily
14 137 CDD cd01448 TST_Repeat_1
174 287 ProSiteProfiles PS50206 Rhodanese domain profile.
174 287 InterPro IPR001763 Rhodanese-like domain
11 287 PANTHER PTHR11364 THIOSULFATE SULFERTANSFERASE
11 287 InterPro IPR045078 Sulfurtransferase TST/MPST-like
175 279 Pfam PF00581 Rhodanese-like domain
175 279 InterPro IPR001763 Rhodanese-like domain
17 137 Pfam PF00581 Rhodanese-like domain
17 137 InterPro IPR001763 Rhodanese-like domain

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #11
0.404
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Surrounding area
Site 2 FPocket #1
0.345
Likely same site as P2Rank 1 0.9 Å 18 shared residues 95% of smaller site
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Surrounding area
Site 3 FPocket #14
0.289
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Surrounding area
Site 4 FPocket #8
0.279
Likely same site as P2Rank 4 2.7 Å 8 shared residues 89% of smaller site
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Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.676
Likely same site as FPocket 1 0.9 Å 18 shared residues 95% of smaller site
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Surrounding area
Site 2 P2Rank #2
0.13
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Surrounding area
Site 3 P2Rank #3
0.012
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Surrounding area
Site 4 P2Rank #4
0.007
Likely same site as FPocket 8 2.7 Å 8 shared residues 89% of smaller site
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Surrounding area
Site 5 P2Rank #5
0.005
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Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GWP1
AlphaFold DB full sequence Viewing
ColabFold KP13_00855
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

63 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 13 records from similar proteins
Structural ligands 5 0 loaded crystals
Measured bioactivity 8 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
7N3 PDB via homolog 360.4 Da · LogP 1.81 · TPSA 117.9 Open detail RCSB PDB
7NC PDB via homolog Detail RCSB PDB
LPB PDB via homolog Detail RCSB PDB
PO2 PDB via homolog Detail RCSB PDB
PYR PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
7N3 RCSB PDB Q99J99 360.4 Da LogP 1.81 TPSA 117.9 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=O)NC(=N2)SCC(=O)Nc3c(ccs3)C(=O)N
7NC RCSB PDB Q99J99 310.4 Da LogP 3.21 TPSA 62.8 ✓ Ro5 ✓ Clean CC1=CC(=O)NC(=N1)SCC(=O)c2cccc3c2cccc3
LPB RCSB PDB P00586 206.3 Da LogP 2.79 TPSA 37.3 ✓ Ro5 ✓ Clean C1CSS[C@H]1CCCCC(=O)O
PO2 RCSB PDB P52197 63.0 Da LogP -0.45 TPSA 40.1 ✓ Ro5 ✓ Clean [O-]P=O
PYR RCSB PDB P25325 88.1 Da LogP -0.34 TPSA 54.4 ✓ Ro5 ✓ Clean CC(=O)C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.