Protein profile

KP13_03058

putative Type VI secretion system protein

Genome: KpKP13

Gene: AHE43390.1 Structure source: AlphaFold + ColabFold UniProt A0A919M3B4
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Amino acids 449
Annotations 0
Features 6
PDB binders 0
Druggability 0.23

Overview

Basic information about this protein and its source genome.

Accession
KP13_03058
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE43390.1
Status
annotated
Amino acids
449
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
89.82

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.23
Structure A0A919M3B4
Pocket Pocket 13
P2Rank 0.119
Structure A0A919M3B4
Pocket Pocket 1
ColabFold model
FPocket 0.678 · Pocket 16
P2Rank 0.068 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 40 / 4744 genomes with a hit
Normalized 0.008

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

6 records
Show feature table
Start End DB Term Name
3 449 PANTHER PTHR35566 BLR3599 PROTEIN
3 449 InterPro IPR010263 Type VI secretion system TssK
18 446 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE
18 446 InterPro IPR010263 Type VI secretion system TssK
5 446 NCBIfam TIGR03353 type VI secretion system baseplate subunit TssK
5 446 InterPro IPR010263 Type VI secretion system TssK

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A919M3B4
AlphaFold — — full sequence — Viewing
ColabFold KP13_03058
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
13 0.23

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 2.76 0.084
2 1.66 0.028