Protein profile

KP13_00961

Glycerol-3-phosphate transporter

Genome: KpKP13

Gene: glpT AHE43509.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GR29
Amino acids 448
Annotations 8
Features 58
PDB binders 1
Druggability 0.564

Overview

Basic information about this protein and its source genome.

Accession
KP13_00961
Gene
glpT AHE43509.1
Status
annotated
Amino acids
448
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
29.545
Human E-value
1.84e-33
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
43.653
DEG E-value
6.25e-124
Localization
CytoplasmicMembrane
ColabFold pLDDT
86.64

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.564
Structure A0A0H3GR29
Pocket Pocket 27
P2Rank 0.945
Structure A0A0H3GR29
Pocket Pocket 1
ColabFold model
FPocket 0.774 · Pocket 2
P2Rank 0.942 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 270 / 4744 genomes with a hit
Normalized 0.057

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0015794 The process in which glycerol-3-phosphate is transported across a membrane. Glycerol-3-phosphate is a phosphoric monoester of glycerol.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0015169 Enables the transfer of glycerol-3-phosphate from one side of a membrane to the other. Glycerol-3-phosphate is a phosphoric monoester of glycerol.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0061513 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose 6-phosphate(out) + phosphate(in) = glucose 6-phosphate(in) + phosphate(out).
  • GO:0035435 The process in which a phosphate is transported across a membrane.

Sequence Features

Domain/signature hits from InterPro and related databases.

58 records
Show feature table
Start End DB Term Name
319 341 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
153 169 ProSitePatterns PS00942 glpT family of transporters signature.
153 169 InterPro IPR021159 Glycerate/sugar phosphate transporter, conserved site
351 373 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
184 188 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
343 353 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
159 183 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
26 44 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
18 226 FunFam G3DSA:1.20.1250.20:FF:000007 Glycerol-3-phosphate transporter
139 158 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
385 405 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
417 437 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
45 63 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
354 373 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
114 118 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
386 408 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 440 NCBIfam TIGR00712 glycerol-3-phosphate transporter
1 440 InterPro IPR005267 Glycerol-3-phosphate transporter
28 45 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
209 253 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
374 384 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
27 435 CDD cd17345 MFS_GlpT
438 448 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
19 226 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
19 226 InterPro IPR036259 MFS transporter superfamily
94 113 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
83 93 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
64 82 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
406 416 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
35 417 NCBIfam TIGR00881 phosphoglycerate transporter protein PgtP
13 441 SUPERFAMILY SSF103473 MFS general substrate transporter
13 441 InterPro IPR036259 MFS transporter superfamily
254 273 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
119 138 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
292 311 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
5 448 PIRSF PIRSF002808 Hexose_phosphate_transp
5 448 InterPro IPR000849 Sugar phosphate transporter
312 322 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
187 206 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 444 PANTHER PTHR43826 GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4
240 448 FunFam G3DSA:1.20.1250.20:FF:000016 Glycerol-3-phosphate transporter
65 87 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
293 312 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
189 208 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
26 440 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile.
26 440 InterPro IPR020846 Major facilitator superfamily domain
94 116 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
120 142 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
34 400 Pfam PF07690 Major Facilitator Superfamily
34 400 InterPro IPR011701 Major facilitator superfamily
155 177 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
240 448 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
240 448 InterPro IPR036259 MFS transporter superfamily
418 437 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
273 291 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
254 272 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
323 342 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GR29
AlphaFold full sequence Viewing
ColabFold KP13_00961
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
27 0.564

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 25.29 0.905
2 2.72 0.081
3 2.57 0.073
4 2.29 0.058
5 1.38 0.017

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

58 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
J0M J7QAK3 196.2 Da LogP -3.49 TPSA 138.5 1 viol. ✓ Clean C([C@H]([C@@H]([C@@H]([C@H](C(=O)O)O)O)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.