Protein profile

KP13_00946

putative ABC transporter ATP-binding protein

Genome: KpKP13

Gene: AHE43526.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GR16
Amino acids 547
Annotations 9
Features 43
PDB binders 7
Druggability 0.79

Overview

Basic information about this protein and its source genome.

Accession
KP13_00946
Gene
AHE43526.1
Status
annotated
Amino acids
547
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
44.615
Human E-value
2.44e-09
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
91.19

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.79
Structure A0A0H3GR16
Pocket Pocket 11
P2Rank 0.373
Structure A0A0H3GR16
Pocket Pocket 1
ColabFold model
FPocket 0.752 · Pocket 1
P2Rank 0.232 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 80 / 4744 genomes with a hit
Normalized 0.017

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

9 GO

Gene Ontology (GO)

9
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0015833 The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:1904680 Enables the transfer of a peptide from one side of a membrane to the other.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0140359 Primary active transporter characterized by two nucleotide-binding domains and two transmembrane domains. Uses the energy generated from ATP hydrolysis to drive the transport of a substance across a membrane.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0034040 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + lipid(in) = ADP + phosphate + lipid(out).

Sequence Features

Domain/signature hits from InterPro and related databases.

43 records
Show feature table
Start End DB Term Name
122 144 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
13 35 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
54 530 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B
54 530 InterPro IPR039421 Type 1 protein exporter
255 265 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
231 254 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
149 171 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
170 230 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
323 547 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
323 547 InterPro IPR003439 ABC transporter-like, ATP-binding domain
50 72 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
266 290 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
342 477 Pfam PF00005 ABC transporter
342 477 InterPro IPR003439 ABC transporter-like, ATP-binding domain
37 55 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
268 290 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
15 291 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile.
15 291 InterPro IPR011527 ABC transporter type 1, transmembrane domain
323 526 CDD cd03228 ABCC_MRP_Like
12 36 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
320 546 Gene3D G3DSA:3.40.50.300 -
320 546 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
231 253 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
348 534 SMART SM00382 AAA_5
348 534 InterPro IPR003593 AAA+ ATPase domain
3 299 SUPERFAMILY SSF90123 ABC transporter transmembrane region
3 299 InterPro IPR036640 ABC transporter type 1, transmembrane domain superfamily
145 149 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
291 547 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 307 Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain
1 307 InterPro IPR036640 ABC transporter type 1, transmembrane domain superfamily
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
150 169 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
316 530 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
316 530 InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
314 546 FunFam G3DSA:3.40.50.300:FF:001035 ABC transporter ATP-binding protein YojI
81 124 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
125 144 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
2 527 NCBIfam TIGR01194 cyclic peptide export ABC transporter
2 527 InterPro IPR005898 Cyclic peptide transporter SyrD/Yoji-like
56 80 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
450 464 ProSitePatterns PS00211 ABC transporters family signature.
450 464 InterPro IPR017871 ABC transporter-like, conserved site

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GR16
AlphaFold full sequence Viewing
ColabFold KP13_00946
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
11 0.79
25 0.585
34 0.434
32 0.375

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 5.15 0.237
2 3.37 0.12
3 2.85 0.09
4 2.39 0.064
5 2.04 0.045

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

57 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
128 P08716 718.3 Da LogP -1.20 TPSA 389.7 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)C…
12D P08716 638.3 Da LogP -1.01 TPSA 340.0 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)C…
2BA Q9KIF7 658.4 Da LogP -1.63 TPSA 309.7 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)C…
AGS A3DCU1 523.2 Da LogP -1.51 TPSA 262.1 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP Q9KIF7 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BET Q9KIF7 118.2 Da LogP -0.22 TPSA 37.3 ✓ Ro5 ✓ Clean C[N+](C)(C)CC(=O)O
DMU A0A100XE85 482.6 Da LogP -1.23 TPSA 178.5 2 viol. ✓ Clean CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)C…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.