Protein profile

KP13_03147

C4-dicarboxylate transport protein

Genome: KpKP13

Gene: AHE43637.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GSL8
Amino acids 424
Annotations 4
Features 46
PDB binders 11
Druggability 0.96

Overview

Basic information about this protein and its source genome.

Accession
KP13_03147
Gene
AHE43637.1
Status
annotated
Amino acids
424
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
35.938
Human E-value
3.81e-07
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
52.239
DEG E-value
7.25e-132
Localization
CytoplasmicMembrane
ColabFold pLDDT
84.78

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.96
Structure A0A0H3GSL8
Pocket Pocket 3
P2Rank 0.469
Structure A0A0H3GSL8
Pocket Pocket 1
ColabFold model
FPocket 0.648 · Pocket 25
P2Rank 0.764 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 60 / 4744 genomes with a hit
Normalized 0.013

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0015293 Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0006835 The directed movement of dicarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

Sequence Features

Domain/signature hits from InterPro and related databases.

46 records
Show feature table
Start End DB Term Name
293 320 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
7 404 SUPERFAMILY SSF118215 Proton glutamate symport protein
7 404 InterPro IPR036458 Sodium:dicarboxylate symporter superfamily
218 228 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 24 SignalP_EUK SignalP-TM SignalP-TM
293 315 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 410 Gene3D G3DSA:1.10.3860.10 Sodium:dicarboxylate symporter
1 410 InterPro IPR036458 Sodium:dicarboxylate symporter superfamily
344 354 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
7 29 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
29 47 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
354 376 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
7 403 Pfam PF00375 Sodium:dicarboxylate symporter family
7 403 InterPro IPR001991 Sodium:dicarboxylate symporter
153 171 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
84 106 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
172 191 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
321 325 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
355 378 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
49 71 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
4 412 PANTHER PTHR42865 PROTON/GLUTAMATE-ASPARTATE SYMPORTER
4 412 InterPro IPR001991 Sodium:dicarboxylate symporter
7 28 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
379 424 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
153 171 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
320 342 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 29 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
326 343 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
73 83 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
106 152 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
192 217 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
192 214 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
48 72 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
331 350 PRINTS PR00173 Glutamate-aspartate symporter signature
81 106 PRINTS PR00173 Glutamate-aspartate symporter signature
296 322 PRINTS PR00173 Glutamate-aspartate symporter signature
358 378 PRINTS PR00173 Glutamate-aspartate symporter signature
51 71 PRINTS PR00173 Glutamate-aspartate symporter signature
148 170 PRINTS PR00173 Glutamate-aspartate symporter signature
5 25 PRINTS PR00173 Glutamate-aspartate symporter signature
196 215 PRINTS PR00173 Glutamate-aspartate symporter signature
84 105 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
227 249 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
250 292 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
229 249 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GSL8
AlphaFold full sequence Viewing
ColabFold KP13_03147
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.96
1 0.55
23 0.229

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 5.33 0.252
2 5.25 0.245
3 4.79 0.212
4 4.78 0.211
5 1.9 0.038

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

119 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
6OU O59010 718.0 Da LogP 11.05 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=…
6Z6 P43003 422.5 Da LogP 5.06 TPSA 85.3 1 viol. ✓ Clean COc1ccc(cc1)C2C(=C(OC3=C2C(=O)CC(C3)c4cccc5c4cc…
7O9 P43003 426.3 Da LogP 2.34 TPSA 138.9 ✓ Ro5 ✓ Clean c1cc(cc(c1)NC(=O)c2ccc(cc2)C(F)(F)F)CO[C@@H]([C…
BCS O59010 211.3 Da LogP 1.33 TPSA 63.3 ✓ Ro5 ✓ Clean c1ccc(cc1)CSC[C@@H](C(=O)O)N
DAS Q5JID0 133.1 Da LogP -1.13 TPSA 100.6 ✓ Ro5 ✓ Clean C([C@H](C(=O)O)N)C(=O)O
DMU Q5JID0 482.6 Da LogP -1.23 TPSA 178.5 2 viol. ✓ Clean CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)C…
PLM O59010 256.4 Da LogP 5.55 TPSA 37.3 1 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)O
QJW Q5JID0 284.2 Da LogP -0.02 TPSA 153.0 ✓ Ro5 ✓ Clean c1ccc(c(c1)CO[C@@H]([C@@H](C(=O)O)N)C(=O)O)N(=O…
QM5 Q5JID0 375.4 Da LogP 1.52 TPSA 143.1 ✓ Ro5 ✓ Clean COc1ccc(cc1)NNc2ccc(cc2)CO[C@@H]([C@@H](C(=O)O)…
TB1 O59010 239.2 Da LogP 0.07 TPSA 109.9 ✓ Ro5 ✓ Clean c1ccc(cc1)CO[C@@H]([C@@H](C(=O)O)N)C(=O)O
TL O59010 204.4 Da LogP -0.38 TPSA 0.0 ✓ Ro5 ✓ Clean [Tl+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.