Protein profile

KP13_03797

Glucose-1-phosphate thymidylyltransferase in cps region

Genome: KpKP13

Gene: rmlA AHE43665.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GQN6
Amino acids 289
Annotations 5
Features 16
PDB binders 31
Druggability 0.309

Overview

Basic information about this protein and its source genome.

Accession
KP13_03797
Gene
rmlA AHE43665.1
Status
annotated
Amino acids
289
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
34.545
Human E-value
3.05e-07
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
75.433
DEG E-value
9.160000000000001e-167
Localization
Cytoplasmic
ColabFold pLDDT
96.72

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.309
Structure A0A0H3GQN6
Pocket Pocket 17
P2Rank 0.908
Structure A0A0H3GQN6
Pocket Pocket 1
ColabFold model
FPocket 0.626 · Pocket 2
P2Rank 0.902 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 2366 / 4744 genomes with a hit
Normalized 0.499

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0045226 OBSOLETE. The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.
  • GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
  • GO:0008879 Catalysis of the reaction: alpha-D-glucose 1-phosphate + dTTP = diphosphate + dTDP-glucose.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
54 289 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 289 Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
1 289 InterPro IPR029044 Nucleotide-diphospho-sugar transferases
2 238 Pfam PF00483 Nucleotidyl transferase
2 238 InterPro IPR005835 Nucleotidyl transferase domain
34 53 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 289 FunFam G3DSA:3.90.550.10:FF:000023 Glucose-1-phosphate thymidylyltransferase
2 286 NCBIfam TIGR01207 glucose-1-phosphate thymidylyltransferase RfbA
2 286 InterPro IPR005907 Glucose-1-phosphate thymidylyltransferase, short form
1 240 CDD cd02538 G1P_TT_short
1 240 InterPro IPR005907 Glucose-1-phosphate thymidylyltransferase, short form
1 288 PANTHER PTHR43532 GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE
1 288 InterPro IPR005907 Glucose-1-phosphate thymidylyltransferase, short form
1 287 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases
1 287 InterPro IPR029044 Nucleotide-diphospho-sugar transferases
1 33 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GQN6
AlphaFold full sequence Viewing
ColabFold KP13_03797
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
17 0.309

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 18.85 0.831
2 5.01 0.228
3 2.11 0.048

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

81 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
4WF Q9HU22 233.2 Da LogP -0.13 TPSA 101.1 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2C(=C(C(=O)NC2=O)N)O
942 Q9HU22 316.4 Da LogP 1.20 TPSA 101.2 ✓ Ro5 ✓ Clean CCCCN1C(=C(C(=O)NC1=O)N(C)C(=O)c2ccccc2)N
BBE Q9HU22 400.5 Da LogP 1.30 TPSA 118.3 ✓ Ro5 ✓ Clean Cc1cccc(c1)S(=O)(=O)N(C)C2=C(N(C(=O)NC2=O)Cc3cc…
BZ0 Q9HU22 336.4 Da LogP 1.42 TPSA 110.0 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2C(=C(C(=O)NC2=O)NC(=O)c3ccccc3)N
DAU Q9AGY4 564.3 Da LogP -3.46 TPSA 276.8 3 viol. ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@]…
DGT P26393 507.2 Da LogP -1.31 TPSA 278.9 3 viol. ✓ Clean c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O…
DH5 Q9HU22 479.4 Da LogP 2.06 TPSA 118.3 ✓ Ro5 ✓ Clean Cc1cc(ccc1Br)CN2C(=C(C(=O)NC2=O)N(C)S(=O)(=O)c3…
DTP P26393 491.2 Da LogP -0.60 TPSA 258.9 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@]…
FKH Q9HU22 400.5 Da LogP 1.30 TPSA 118.3 ✓ Ro5 ✓ Clean Cc1cccc(c1)CN2C(=C(C(=O)NC2=O)N(C)S(=O)(=O)c3cc…
GDU Q9AGY4 566.3 Da LogP -4.79 TPSA 297.0 3 viol. ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
GJB Q9HU22 232.2 Da LogP 0.70 TPSA 66.5 ✓ Ro5 ✓ Clean c1ccc(cc1)CCN2C(=O)CC(=O)NC2=O
HKX Q9HU22 465.3 Da LogP 1.75 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2cccc(c2)Br)N)S(=O)(=O)c…
HNR Q9HU22 352.4 Da LogP 0.74 TPSA 118.3 ✓ Ro5 ✓ Clean CCCCN1C(=C(C(=O)NC1=O)N(C)S(=O)(=O)c2ccccc2)N
JWT Q9HU22 404.4 Da LogP 1.13 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)N)S(=O)(=O)c3ccc…
KDT Q9HU22 465.3 Da LogP 1.75 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccc(cc2)Br)N)S(=O)(=O)c…
KKT Q9HU22 366.4 Da LogP 0.73 TPSA 118.3 ✓ Ro5 ✓ Clean CCCCS(=O)(=O)N(C)C1=C(N(C(=O)NC1=O)Cc2ccccc2)N
LD6 Q9HU22 404.4 Da LogP 1.13 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2cccc(c2)F)N)S(=O)(=O)c3…
M9Z Q9HU22 524.6 Da LogP 0.96 TPSA 161.0 1 viol. ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)NCCCn3cc(nn3)CN)…
MBK Q9HU22 536.5 Da LogP 2.32 TPSA 130.3 1 viol. ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccc(cc2)Br)NCCCCN)S(=O)…
N5Y Q9HU22 350.4 Da LogP 1.44 TPSA 101.2 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)N)C(=O)c3ccccc3
N6A Q9HU22 386.4 Da LogP 0.99 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2)N)S(=O)(=O)c3ccc…
NIQ Q9HU22 266.3 Da LogP 1.27 TPSA 92.9 ✓ Ro5 ✓ Clean CCCCN1C(=C(C(=O)NC1=O)NC2CCCC2)N
NVQ Q9HU22 536.5 Da LogP 2.19 TPSA 116.3 1 viol. ✓ Clean CNCCCNC1=C(C(=O)NC(=O)N1Cc2ccc(cc2)Br)N(C)S(=O)…
NWL Q9HU22 260.3 Da LogP 0.60 TPSA 92.9 ✓ Ro5 ✓ Clean CCNC1=C(N(C(=O)NC1=O)Cc2ccccc2)N
P3I Q9HU22 465.3 Da LogP 1.75 TPSA 118.3 ✓ Ro5 ✓ Clean CN(C1=C(N(C(=O)NC1=O)Cc2ccccc2Br)N)S(=O)(=O)c3c…
THM Q9AGY4 242.2 Da LogP -1.51 TPSA 104.6 ✓ Ro5 ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
TRH Q9HU22 548.3 Da LogP -2.43 TPSA 256.5 3 viol. ✓ Clean C[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)O[P@](=O)(O)…
TTP Q9HU22 482.2 Da LogP -1.16 TPSA 244.1 2 viol. ✓ Clean CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@]…
UD1 Q9AGY4 607.4 Da LogP -4.65 TPSA 305.9 3 viol. ✓ Clean CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O[P@@]…
UPG P26393 566.3 Da LogP -4.79 TPSA 297.0 3 viol. ✓ Clean C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)C…
Y46 Q9HU22 372.4 Da LogP 0.97 TPSA 127.0 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2C(=C(C(=O)NC2=O)NS(=O)(=O)c3ccccc3…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.