Protein profile

KP13_04706

Formyltetrahydrofolate deformylase

Genome: KpKP13

Gene: purU AHE44030.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GUZ9
Amino acids 280
Annotations 5
Features 37
PDB binders 23
Druggability 0.407

Overview

Basic information about this protein and its source genome.

Accession
KP13_04706
Gene
purU AHE44030.1
Status
annotated
Amino acids
280
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
32.857
Human E-value
2.06e-16
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
95.357
DEG E-value
0.0
Localization
Cytoplasmic
ColabFold pLDDT
96.29

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.407
Structure A0A0H3GUZ9
Pocket Pocket 11
P2Rank 0.442
Structure A0A0H3GUZ9
Pocket Pocket 1
ColabFold model
FPocket 0.562 · Pocket 10
P2Rank 0.535 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 180 / 4744 genomes with a hit
Normalized 0.038

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
  • GO:0006189 The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
  • GO:0008864 Catalysis of the reaction: 10-formyltetrahydrofolate + H2O = (6S)-5,6,7,8-tetrahydrofolate + formate + H+.
  • GO:0006730 The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.

Sequence Features

Domain/signature hits from InterPro and related databases.

37 records
Show feature table
Start End DB Term Name
8 280 NCBIfam TIGR00655 formyltetrahydrofolate deformylase
8 280 InterPro IPR004810 Formyltetrahydrofolate deformylase
3 279 PANTHER PTHR42706 FORMYLTETRAHYDROFOLATE DEFORMYLASE
3 279 InterPro IPR004810 Formyltetrahydrofolate deformylase
8 71 CDD cd04875 ACT_F4HF-DF
8 71 InterPro IPR044074 Formyltetrahydrofolate deformylase, ACT domain
6 56 SUPERFAMILY SSF55021 ACT-like
6 56 InterPro IPR045865 ACT-like domain
2 79 Gene3D G3DSA:3.30.70.260 -
85 280 CDD cd08648 FMT_core_Formyl-FH4-Hydrolase_C
85 280 InterPro IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain
86 279 SUPERFAMILY SSF53328 Formyltransferase
86 279 InterPro IPR036477 Formyl transferase, N-terminal domain superfamily
84 280 FunFam G3DSA:3.40.50.170:FF:000001 Formyltetrahydrofolate deformylase
4 280 PIRSF PIRSF036480 FormyFH4_hydr
8 69 Pfam PF01842 ACT domain
8 69 InterPro IPR002912 ACT domain
41 53 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
41 53 InterPro IPR004810 Formyltetrahydrofolate deformylase
108 135 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
108 135 InterPro IPR004810 Formyltetrahydrofolate deformylase
9 35 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
9 35 InterPro IPR004810 Formyltetrahydrofolate deformylase
86 108 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
86 108 InterPro IPR004810 Formyltetrahydrofolate deformylase
254 279 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
254 279 InterPro IPR004810 Formyltetrahydrofolate deformylase
232 254 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
232 254 InterPro IPR004810 Formyltetrahydrofolate deformylase
4 77 FunFam G3DSA:3.30.70.260:FF:000021 Formyltetrahydrofolate deformylase
84 280 Gene3D G3DSA:3.40.50.170 -
8 86 ProSiteProfiles PS51671 ACT domain profile.
8 86 InterPro IPR002912 ACT domain
4 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU].
4 280 InterPro IPR004810 Formyltetrahydrofolate deformylase
86 262 Pfam PF00551 Formyl transferase
86 262 InterPro IPR002376 Formyl transferase, N-terminal

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GUZ9
AlphaFold full sequence Viewing
ColabFold KP13_04706
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
11 0.407
1 0.368
2 0.316

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 5.08 0.232
2 2.72 0.082
3 2.1 0.048
4 1.91 0.039

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

147 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
138 P08179 752.6 Da LogP -2.34 TPSA 353.5 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)[C@@](Cc2…
3YA P22102 472.5 Da LogP 2.18 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(ccc1CCCCc2cc3c(s2)NC(=NC3=O)N)C(=O)N[C@@H]…
3YB P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCCc2cc3c…
3YC P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@…
3YD P22102 407.4 Da LogP 0.76 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCC(=O)N[C@@H](CC…
3YE P22102 421.5 Da LogP 1.15 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCCC(=O)N[C@@H](C…
3YF P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCc2cc3c(…
3YG P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H…
4DW P22102 425.4 Da LogP 0.44 TPSA 191.3 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H…
83A P22102 442.4 Da LogP 0.54 TPSA 203.3 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCCc2cc3c…
DXZ P22102 477.5 Da LogP 1.41 TPSA 201.5 1 viol. ✓ Clean CS[C@H](CCCC1=C(N=C(NC1=O)N)N)c2ccc(cc2)C(=O)N[…
DZF P08179 440.4 Da LogP 0.56 TPSA 200.4 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cc3c(…
FLC Q88LI9 189.1 Da LogP -5.25 TPSA 140.6 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(CC(=O)[O-])(C(=O)[O-])O
G71 P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1cc(sc1CCCCc2cc3c([nH]2)NC(=NC3=O)N)C(=O)N[C@@…
G94 P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1cc(sc1CCCc2cc3c([nH]2)NC(=NC3=O)N)C(=O)N[C@@H…
GAR P22102 284.2 Da LogP -4.65 TPSA 177.2 ✓ Ro5 ✓ Clean C([C@@H]1[C@H]([C@H]([C@@H](O1)NC(=O)CN)O)O)OP(…
KEU P22102 549.5 Da LogP -0.91 TPSA 237.3 2 viol. ✓ Clean c1cc(ccc1[C@@H](CCCC2C(NC(NC2=O)N)N)C(C(F)(F)F)…
KT3 P22102 803.7 Da LogP -0.56 TPSA 375.0 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
KT5 P22102 1061.9 Da LogP -1.86 TPSA 507.8 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
NHR P08179 482.4 Da LogP 1.38 TPSA 213.0 1 viol. ✓ Clean c1cc(ccc1[C@@H](Cc2ccc3c(c2)c(nc(n3)N)O)C(=O)O)…
NHS P08179 482.4 Da LogP 0.96 TPSA 212.8 1 viol. ✓ Clean c1cc(ccc1[C@H](Cc2ccc3c(c2)C(=O)NC(=N3)N)C(=O)O…
U89 P08179 715.7 Da LogP -0.31 TPSA 317.7 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N(CCCC2=C…
V97 P22102 478.6 Da LogP 2.24 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(sc1CCCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.