Protein profile

KP13_05154

Superoxide dismutase Cu-Zn

Genome: KpKP13

Gene: sodC AHE44273.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GYX9
Amino acids 150
Annotations 5
Features 10
PDB binders 25
Druggability 0.82

Overview

Basic information about this protein and its source genome.

Accession
KP13_05154
Gene
sodC AHE44273.1
Status
annotated
Amino acids
150
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
30.894
Human E-value
2.59e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Periplasmic
ColabFold pLDDT
98.11

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.82
Structure A0A0H3GYX9
Pocket Pocket 1
P2Rank 0.371
Structure A0A0H3GYX9
Pocket Pocket 1
ColabFold model
FPocket 0.045 · Pocket 4
P2Rank 0.085 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 138 / 4744 genomes with a hit
Normalized 0.029

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0005507 Binding to a copper (Cu) ion.
  • GO:0006801 The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
  • GO:0046872 Binding to a metal ion.
  • GO:0004784 Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + H2O2.

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
16 149 Pfam PF00080 Copper/zinc superoxide dismutase (SODC)
16 149 InterPro IPR001424 Superoxide dismutase, copper/zinc binding domain
4 150 SUPERFAMILY SSF49329 Cu,Zn superoxide dismutase-like
4 150 InterPro IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily
138 149 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2.
138 149 InterPro IPR018152 Superoxide dismutase, copper/zinc, binding site
1 150 Gene3D G3DSA:2.60.40.200 Superoxide dismutase, copper/zinc binding domain
1 150 InterPro IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily
15 150 PANTHER PTHR10003 SUPEROXIDE DISMUTASE CU-ZN -RELATED
15 150 InterPro IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GYX9
AlphaFold full sequence Viewing
ColabFold KP13_05154
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.82

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 4.44 0.188
2 3.07 0.102
3 2.43 0.066

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

87 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
12I P00441 228.3 Da LogP 1.38 TPSA 32.3 ✓ Ro5 ✓ Clean CN1CCN(CC1)c2c3ccccc3ncn2
4MQ P00441 242.3 Da LogP 1.77 TPSA 32.3 ✓ Ro5 ✓ Clean CN1CCCN(CC1)c2c3ccccc3ncn2
5FW P00441 211.3 Da LogP 1.13 TPSA 72.7 ✓ Ro5 Alert CC(C)NC[C@@H](c1ccc(c(c1)O)O)O
5UD P00441 262.2 Da LogP -2.71 TPSA 124.8 ✓ Ro5 ✓ Clean C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)…
6B3 P00441 434.5 Da LogP 5.30 TPSA 99.3 1 viol. ✓ Clean c1ccc2c(c1)-c3ccc(cc3NC2=O)NC(=O)c4ccccc4c5cccc…
946 P00441 309.4 Da LogP 3.07 TPSA 72.7 ✓ Ro5 Alert c1ccc2cc(ccc2c1)CNC[C@@H](c3ccc(c(c3)O)O)O
9JK P00441 229.3 Da LogP 3.23 TPSA 29.1 ✓ Ro5 ✓ Clean c1ccc(cc1)NC(=O)c2ccccc2S
9JT P00441 276.2 Da LogP 1.46 TPSA 29.1 ✓ Ro5 ✓ Clean c1ccc(cc1)NC(=O)c2ccccc2[SeH]
ALE P00441 183.2 Da LogP 0.35 TPSA 72.7 ✓ Ro5 Alert CNC[C@@H](c1ccc(c(c1)O)O)O
AZI Q07449 42.0 Da LogP 0.87 TPSA 58.7 ✓ Ro5 Alert [N-]=[N+]=[N-]
D7Z P00441 378.2 Da LogP 1.78 TPSA 24.1 ✓ Ro5 ✓ Clean C1CC[C@@H]2[C@@H](C1)N[Pt](N2)(Cl)Cl
IUM P00446 270.0 Da LogP -2.38 TPSA 46.1 ✓ Ro5 ✓ Clean [O-][U+4][O-]
LDP P00441 153.2 Da LogP 0.60 TPSA 66.5 ✓ Ro5 Alert c1cc(c(cc1CCN)O)O
LQN P00441 420.3 Da LogP 4.15 TPSA 29.1 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)Nc2cccc(c2)c3ccc(cc3)C(F)(F)F)[…
LQW P00441 324.7 Da LogP 1.80 TPSA 29.1 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)NCc2ccc(cc2)Cl)[SeH]
LR2 P00441 277.2 Da LogP 0.86 TPSA 42.0 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)Nc2ccccn2)[SeH]
MLI P00441 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
PE8 P00441 370.4 Da LogP -0.91 TPSA 105.1 ✓ Ro5 ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCO)O
PEO B6CHW7 34.0 Da LogP 0.02 TPSA 40.5 ✓ Ro5 ✓ Clean OO
PPI P00441 74.1 Da LogP 0.48 TPSA 37.3 ✓ Ro5 ✓ Clean CCC(=O)O
PS5 P00441 160.3 Da LogP 1.94 TPSA 0.0 ✓ Ro5 ✓ Clean [S-]SSS[S-]
S4P P00441 130.3 Da LogP 2.06 TPSA 0.0 ✓ Ro5 ✓ Clean SSSS
TAM P00441 163.2 Da LogP -1.17 TPSA 86.7 ✓ Ro5 ✓ Clean C(CO)C(CCO)(CCO)N
ZO0 P00441 310.3 Da LogP 2.79 TPSA 32.3 ✓ Ro5 ✓ Clean CN1CCCN(CC1)c2c3ccccc3nc(n2)C(F)(F)F
ZZT P00441 137.2 Da LogP 1.59 TPSA 35.2 ✓ Ro5 ✓ Clean Cc1ccc(c(c1)N)OC

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.