Protein profile

KP13_05556

LysM domain/BON superfamily protein

Genome: KpKP13

Gene: AHE44562.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GSY1
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Amino acids 149
Annotations 1
Features 16
PDB binders 0
Druggability 0.055

Overview

Basic information about this protein and its source genome.

Accession
KP13_05556
Assembly
Klebsiella pneumoniae subsp. pneumoniae Kp13, complete sequence
Gene
AHE44562.1
Status
annotated
Amino acids
149
Structure source
AlphaFold + ColabFold
GO
GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
64.865
DEG E-value
8.63e-64
Localization
Unknown
ColabFold pLDDT
91.17

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.055
Structure A0A0H3GSY1
Pocket Pocket 2
P2Rank 0.04
Structure A0A0H3GSY1
Pocket Pocket 1
ColabFold model
FPocket 0.155 · Pocket 2
P2Rank 0.066 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 73 / 4744 genomes with a hit
Normalized 0.015

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
98 147 SMART SM00257 LysM_2
98 147 InterPro IPR018392 LysM domain
24 90 Pfam PF04972 BON domain
24 90 InterPro IPR007055 BON domain
97 146 ProSiteProfiles PS51782 LysM domain profile.
97 146 InterPro IPR018392 LysM domain
96 149 FunFam G3DSA:3.10.350.10:FF:000001 Peptidoglycan-binding protein LysM
97 147 SUPERFAMILY SSF54106 LysM domain
97 147 InterPro IPR036779 LysM domain superfamily
97 146 CDD cd00118 LysM
22 91 ProSiteProfiles PS50914 BON domain profile.
22 91 InterPro IPR007055 BON domain
94 149 Gene3D G3DSA:3.10.350.10 LysM domain
94 149 InterPro IPR036779 LysM domain superfamily
99 147 Pfam PF01476 LysM domain
99 147 InterPro IPR018392 LysM domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

No pockets are loaded yet for the displayed AlphaFold model AF_A0A0H3GSY1 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GSY1
AlphaFold — — full sequence — Viewing
ColabFold KP13_05556
ColabFold — — full sequence — Loaded