Protein profile

KP13_05217

Methionine aminopeptidase

Genome: KpKP13

Gene: AHE44624.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GPS3
Amino acids 236
Annotations 6
Features 23
PDB binders 38
Druggability 0.315

Overview

Basic information about this protein and its source genome.

Accession
KP13_05217
Gene
AHE44624.1
Status
annotated
Amino acids
236
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
44.348
Human E-value
1.3500000000000004e-59
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
56.71
DEG E-value
4.61e-90
Localization
Cytoplasmic
ColabFold pLDDT
97.88

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.315
Structure A0A0H3GPS3
Pocket Pocket 13
P2Rank 0.937
Structure A0A0H3GPS3
Pocket Pocket 1
ColabFold model
FPocket 0.606 · Pocket 1
P2Rank 0.936 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 191 / 4744 genomes with a hit
Normalized 0.04

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 5 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

5
  • GO:0006508 The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
  • GO:0070006 Catalysis of the hydrolysis of a single N-terminal amino acid residue from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0004239 Catalysis of the release of N-terminal initiator methionine from peptides.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

23 records
Show feature table
Start End DB Term Name
1 228 Hamap MF_01974 Methionine aminopeptidase [map].
1 228 InterPro IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1
4 227 NCBIfam TIGR00500 methionine aminopeptidase, type I
4 227 InterPro IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1
2 233 SUPERFAMILY SSF55920 Creatinase/aminopeptidase
2 233 InterPro IPR036005 Creatinase/aminopeptidase-like
1 227 CDD cd01086 MetAP1
1 227 InterPro IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1
7 219 Pfam PF00557 Metallopeptidase family M24
7 219 InterPro IPR000994 Peptidase M24
3 228 PANTHER PTHR43330 METHIONINE AMINOPEPTIDASE
170 182 PRINTS PR00599 Methionine aminopeptidase-1 signature
170 182 InterPro IPR001714 Peptidase M24, methionine aminopeptidase
46 59 PRINTS PR00599 Methionine aminopeptidase-1 signature
46 59 InterPro IPR001714 Peptidase M24, methionine aminopeptidase
139 151 PRINTS PR00599 Methionine aminopeptidase-1 signature
139 151 InterPro IPR001714 Peptidase M24, methionine aminopeptidase
69 85 PRINTS PR00599 Methionine aminopeptidase-1 signature
69 85 InterPro IPR001714 Peptidase M24, methionine aminopeptidase
145 163 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature.
145 163 InterPro IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1
1 235 Gene3D G3DSA:3.90.230.10 Creatinase/methionine aminopeptidase superfamily
1 235 InterPro IPR036005 Creatinase/aminopeptidase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GPS3
AlphaFold full sequence Viewing
ColabFold KP13_05217
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
13 0.315

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 25.89 0.909
2 2.12 0.049

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

188 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
4L9 P0AE18 441.5 Da LogP 2.66 TPSA 78.5 ✓ Ro5 ✓ Clean C[C@@H](C(=O)N[C@H]1CC=C[C@@H](N(C1=O)C)c2ccccc…
7NP C3TPN7 190.2 Da LogP 2.46 TPSA 26.3 ✓ Ro5 ✓ Clean C[C@H]1CCc2ccc(cc2C1=O)OC
A05 P0AE18 267.6 Da LogP 3.21 TPSA 93.6 ✓ Ro5 ✓ Clean c1cc(c(cc1[N+](=O)[O-])Cl)c2ccc(o2)C(=O)O
A18 P0AE18 236.7 Da LogP 3.22 TPSA 50.4 ✓ Ro5 ✓ Clean c1ccc(c(c1)Cc2ccc(o2)C(=O)O)Cl
B23 P0AE18 233.2 Da LogP 2.55 TPSA 93.6 ✓ Ro5 ✓ Clean c1ccc(c(c1)c2ccc(o2)C(=O)O)[N+](=O)[O-]
CT0 P0AE18 239.3 Da LogP 1.14 TPSA 71.1 ✓ Ro5 ✓ Clean c1csc(n1)NC(=O)C(=O)NC2CCCC2
EYF P53582 297.3 Da LogP 2.21 TPSA 76.4 ✓ Ro5 ✓ Clean COc1cccc(c1)Cn2ccc3c2ncc(c3)C(=O)NO
EYL P53582 267.3 Da LogP 2.20 TPSA 67.2 ✓ Ro5 ✓ Clean c1ccc(cc1)Cn2ccc3c2nccc3C(=O)NO
MF3 P0AE18 203.2 Da LogP 1.04 TPSA 63.3 ✓ Ro5 ✓ Clean C(CSC(F)(F)F)[C@@H](C(=O)O)N
MPH P0AE18 185.2 Da LogP 0.20 TPSA 83.6 ✓ Ro5 ✓ Clean CSCC[C@H](N)P(=O)(O)O
MPJ P0AE18 169.2 Da LogP 0.49 TPSA 63.3 ✓ Ro5 ✓ Clean CSCC[C@H](N)[P@H](=O)O
NLP P0AE18 167.1 Da LogP 0.64 TPSA 83.6 ✓ Ro5 ✓ Clean CCCC[C@H](N)P(=O)(O)O
OVA P53582 298.4 Da LogP 1.36 TPSA 79.3 ✓ Ro5 ✓ Clean CC(=CC[C@@H]1[C@@](O1)(C)[C@]2([C@@H](C(=O)CC[C…
PVP P53582 333.8 Da LogP 1.61 TPSA 65.4 ✓ Ro5 ✓ Clean Cc1c(c(nc(n1)c2ccccn2)N3CCN(CC3)CCO)Cl
Q02 P53582 187.1 Da LogP 0.82 TPSA 83.6 ✓ Ro5 ✓ Clean c1ccc(cc1)[C@H](N)P(=O)(O)O
Q03 P53582 193.2 Da LogP 1.03 TPSA 83.6 ✓ Ro5 ✓ Clean C1CCC(CC1)[C@H](N)P(=O)(O)O
Q04 P53582 207.2 Da LogP 1.42 TPSA 83.6 ✓ Ro5 ✓ Clean C1CCC(CC1)C[C@H](N)P(=O)(O)O
Q06 P53582 207.2 Da LogP 1.42 TPSA 83.6 ✓ Ro5 ✓ Clean C1CCC(C1)CC[C@H](N)P(=O)(O)O
Q07 P53582 181.2 Da LogP 0.89 TPSA 83.6 ✓ Ro5 ✓ Clean CCC[C@H](C)[C@H](N)P(=O)(O)O
Q08 P53582 209.2 Da LogP 1.67 TPSA 83.6 ✓ Ro5 ✓ Clean CCCC(CCC)[C@H](N)P(=O)(O)O
QMS P0AE18 222.3 Da LogP 1.61 TPSA 59.1 ✓ Ro5 ✓ Clean CS(=O)(=O)Nc1cccc2c1nccc2
SHX P53582 367.8 Da LogP 3.01 TPSA 93.8 ✓ Ro5 ✓ Clean Cc1c(c(nc(n1)c2ccccn2)N[C@H](Cc3ccccc3)C(=O)N)Cl
TN4 P53582 403.9 Da LogP 2.54 TPSA 97.4 ✓ Ro5 ✓ Clean CC(=CC[C@@H]1C(O1)(C)[C@H]2[C@@H]([C@@H](CC[C@@…
U11 P0AE18 391.3 Da LogP -0.14 TPSA 130.8 ✓ Ro5 ✓ Clean C[C@@H](C(=O)NCC(=O)OC)NC(=O)[C@H]([C@@H](c1ccc…
U12 P0AE18 268.2 Da LogP 3.36 TPSA 99.3 ✓ Ro5 Alert c1cc(cc(c1)/N=N/C2=C(N=NC2=N)N)C(F)(F)F
U13 P0AE18 218.2 Da LogP 2.48 TPSA 99.3 ✓ Ro5 Alert [H]/N=C/1\C(=C(N=N1)N)/N=N/c2ccc(cc2)F
U14 P0AE18 244.2 Da LogP 2.04 TPSA 136.6 ✓ Ro5 Alert [H]/N=C\1/C(=C(N=N1)N)/N=N/c2cccc(c2)C(=O)O
U15 P0AE18 393.5 Da LogP 0.56 TPSA 130.8 ✓ Ro5 ✓ Clean Cc1ccc(cc1)[C@H]([C@@H](C(=O)N[C@@H](C)C(=O)N[C…
U16 P0AE18 421.5 Da LogP 1.38 TPSA 130.8 ✓ Ro5 ✓ Clean CC(C)C[C@H](C(=O)OC)NC(=O)[C@H](C)NC(=O)[C@H]([…
U17 P0AE18 375.5 Da LogP -0.95 TPSA 151.0 ✓ Ro5 ✓ Clean CCCC[C@H]([C@@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](C…
U19 P0AE18 268.2 Da LogP 3.36 TPSA 99.3 ✓ Ro5 Alert [H]/N=C\1/C(=C(N=N1)N)/N=N/c2ccccc2C(F)(F)F
W29 P0AE18 220.3 Da LogP 3.39 TPSA 40.5 ✓ Ro5 Alert CCc1ccsc1c2ccc(c(c2)O)O
Y08 P53582 426.6 Da LogP 0.45 TPSA 119.3 ✓ Ro5 ✓ Clean CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NC[C…
Y10 P53582 377.5 Da LogP 0.97 TPSA 99.0 ✓ Ro5 ✓ Clean CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NC1C…
Y16 P53582 318.4 Da LogP -1.71 TPSA 142.1 ✓ Ro5 ✓ Clean CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NCC(…
YE6 P0AE18 236.7 Da LogP 2.20 TPSA 68.3 ✓ Ro5 ✓ Clean c1ccc(c(c1)c2ccc(o2)C(=O)NN)Cl
YE7 P0AE18 226.2 Da LogP 1.09 TPSA 72.4 ✓ Ro5 ✓ Clean c1ccc2c(c1)ccn3c2nc(c3)C(=O)NN
YZ6 P53582 445.6 Da LogP 2.62 TPSA 112.2 ✓ Ro5 ✓ Clean CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NCC[…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.