Target candidate with partial support; inspect missing evidence before prioritizing.
Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.
Main supporting evidence
Risks to review
Terms and data sources used on this page
PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.
AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.
ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.
pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.
FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.
Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.
PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.
ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.
ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.
LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.
Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.
DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.
Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.
EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.
KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.
Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.
Prioritization evidence
Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.
Off-target risk
- Human off-target
- No hit
- Gut microbiome similarity
- 0.2% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.
Essentiality
- Essential (DEG)
- N
- DEG identity (%)
- 0.0 Higher values support similarity to known essential genes.
Localization
- Localization
- Cytoplasmic
Structure confidence
- ColabFold pLDDT
- 80.43 0-100 confidence; >70 supports local structural interpretation.
Binding-site evidence
AlphaFold DB / UniProt modelThe selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.
Cross-references
External database identifiers for this protein, its structures, ligands, and metabolic reactions.
Sequence
Sequence
Primary amino-acid sequence viewer.
MKVMNTLQSTNWLQYGIKDIKHLKHANMHDPLIPFEPVFSPQGPTLLVAVRQSEVIRETPRHHHSCGQLIGAIRGLLTVDGGDCRWVVPATHAVWIPPGVPHGLRSHGPYSGWSVYVSAKACGELPDKPSVLSMTNLLREAITRAAAWQGVELNASQKRLAGVILDEIGSLPRVNLRLPMPQDSRLLRIAQALSANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLRALELLAAGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRYKI
Functional annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
3- GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
- GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
- GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Sequence domains and features
Domain and signature matches imported from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 200 | 282 | SMART | SM00342 | aracneu4 |
| 200 | 282 | InterPro | IPR018060 | DNA binding HTH domain, AraC-type |
| 236 | 282 | SUPERFAMILY | SSF46689 | Homeodomain-like |
| 236 | 282 | InterPro | IPR009057 | Homeobox-like domain superfamily |
| 181 | 283 | FunFam | G3DSA:1.10.10.60:FF:000132 | AraC family transcriptional regulator |
| 58 | 137 | Pfam | PF02311 | AraC-like ligand binding domain |
| 58 | 137 | InterPro | IPR003313 | AraC-type arabinose-binding/dimerisation domain |
| 42 | 119 | Gene3D | G3DSA:2.60.120.10 | Jelly Rolls |
| 42 | 119 | InterPro | IPR014710 | RmlC-like jelly roll fold |
| 180 | 283 | Gene3D | G3DSA:1.10.10.60 | - |
| 187 | 283 | ProSiteProfiles | PS01124 | Bacterial regulatory proteins, araC family DNA-binding domain profile. |
| 187 | 283 | InterPro | IPR018060 | DNA binding HTH domain, AraC-type |
| 237 | 278 | ProSitePatterns | PS00041 | Bacterial regulatory proteins, araC family signature. |
| 237 | 278 | InterPro | IPR018062 | HTH domain AraC-type, conserved site |
| 251 | 266 | PRINTS | PR00032 | AraC bacterial regulatory protein HTH signature |
| 251 | 266 | InterPro | IPR020449 | Transcription regulator HTH, AraC- type |
| 266 | 282 | PRINTS | PR00032 | AraC bacterial regulatory protein HTH signature |
| 266 | 282 | InterPro | IPR020449 | Transcription regulator HTH, AraC- type |
| 206 | 281 | Pfam | PF12833 | Helix-turn-helix domain |
| 206 | 281 | InterPro | IPR018060 | DNA binding HTH domain, AraC-type |
| 28 | 211 | SUPERFAMILY | SSF51182 | RmlC-like cupins |
| 28 | 211 | InterPro | IPR011051 | RmlC-like cupin domain superfamily |
| 57 | 140 | CDD | cd06124 | cupin_NimR-like_N |
| 48 | 282 | PANTHER | PTHR11019 | HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR |
3D structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.
How colors and pocket overlays are used
Pocket details Inspect a specific pocket, or open the full viewer
- Method
- -
- Score
- -
- Visible layer
- -
- Residues
- -
- Pocket properties
- -
Selecting a pocket opens its details and centers the viewer without clearing other active layers. Use Focus this pocket when you want to hide the rest; use Surface for the wider residue environment.
Binding pockets · FPocket
Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4
Binding pockets · P2Rank
Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2
Binding pockets · FPocket
Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4
Binding pockets · P2Rank
Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2
All structural evidence
Structural evidence
0 + 2Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold DB
AF_A0A6A8EP80
|
AlphaFold DB | — | — | full sequence | — | Viewing |
|
ColabFold
KP13_32394
|
ColabFold | — | — | full sequence | — | Loaded |