Protein profile

KP13_05022

Dihydrofolate reductase folM

Genome: KpKP13

Gene: AHE44803.1 folM Structure source: AlphaFold + ColabFold UniProt A0A0H3GMP8
Amino acids 240
Annotations 5
Features 13
PDB binders 93
Druggability 0.283

Overview

Basic information about this protein and its source genome.

Accession
KP13_05022
Gene
AHE44803.1 folM
Status
annotated
Amino acids
240
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
27.751
Human E-value
5.7e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
96.68

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.283
Structure A0A0H3GMP8
Pocket Pocket 6
P2Rank 0.619
Structure A0A0H3GMP8
Pocket Pocket 1
ColabFold model
FPocket 0.51 · Pocket 1
P2Rank 0.646 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 73 / 4744 genomes with a hit
Normalized 0.015

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 EC 3 GO

Enzyme Commission (EC)

2

Gene Ontology (GO)

3
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0004146 Catalysis of the reaction: 5,6,7,8-tetrahydrofolate + NADP+ = 7,8-dihydrofolate + NADPH + H+.
  • GO:0006730 The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.

Sequence Features

Domain/signature hits from InterPro and related databases.

13 records
Show feature table
Start End DB Term Name
8 238 Gene3D G3DSA:3.40.50.720 -
172 189 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
172 189 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
152 171 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
152 171 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
8 25 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
8 25 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
139 167 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
139 167 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
3 239 PANTHER PTHR43639 OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
7 237 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
7 237 InterPro IPR036291 NAD(P)-binding domain superfamily
13 236 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GMP8
AlphaFold full sequence Viewing
ColabFold KP13_05022
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.283

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 6.35 0.319
2 4.76 0.21
3 2.77 0.084
4 1.37 0.016

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

178 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
1CY O76290 251.7 Da LogP 1.53 TPSA 80.0 ✓ Ro5 ✓ Clean CC1(N=C(N=C(N1c2ccc(cc2)Cl)N)N)C
34X O54438 311.3 Da LogP 3.05 TPSA 85.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2cn(c(n2)N)NC(=O)Nc3ccccc3F
36E O54438 186.1 Da LogP 2.58 TPSA 28.7 ✓ Ro5 ✓ Clean c1ccc2c(c1)[nH]c(n2)C(F)(F)F
36G O54438 282.3 Da LogP 3.68 TPSA 41.6 ✓ Ro5 ✓ Clean COc1ccccc1NC(=O)N2CCCc3c2cccc3
36I O54438 297.4 Da LogP 3.19 TPSA 38.2 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc3ccsc3c(n2)N4CCOCC4
36K O54438 310.4 Da LogP 3.71 TPSA 68.2 ✓ Ro5 ✓ Clean CCn1c2ccccc2nc1NC(=O)Nc3ccccc3OC
36P O54438 312.4 Da LogP 4.07 TPSA 33.2 ✓ Ro5 ✓ Clean c1ccc2c(c1)CCN2C(=O)c3csc(n3)c4ccsc4
3KH O76290 218.2 Da LogP 1.06 TPSA 93.4 ✓ Ro5 ✓ Clean c1cc2c(cc1c3nnc(s3)N)[nH]nn2
3KN O76290 193.2 Da LogP 0.76 TPSA 90.7 ✓ Ro5 ✓ Clean c1cncc(c1N)c2nnc(s2)N
3X3 O54438 318.3 Da LogP 3.50 TPSA 66.0 ✓ Ro5 ✓ Clean c1ccc(cc1)n2nc(nn2)c3ccccc3OCc4ccco4
4NR O76290 243.2 Da LogP 1.88 TPSA 93.6 ✓ Ro5 ✓ Clean c1cc(ccc1c2cnc-3[nH]c(nc(c23)N)N)F
6F4 O76290 212.3 Da LogP 1.79 TPSA 63.8 ✓ Ro5 ✓ Clean c1cc(sc1)CNc2nnc(s2)N
6JM O76290 286.2 Da LogP 2.28 TPSA 111.1 ✓ Ro5 Alert c1cc(c(cc1C2=C(C(=O)c3cc(ccc3O2)O)O)O)O
6JO O76290 270.2 Da LogP 2.58 TPSA 90.9 ✓ Ro5 ✓ Clean c1cc(cc(c1)O)C2=C(C(=O)c3cc(ccc3O2)O)O
6JP O76290 302.3 Da LogP 2.52 TPSA 96.2 ✓ Ro5 ✓ Clean COc1ccc(cc1O)[C@@H]2CC(=O)c3c(cc(cc3O2)O)O
6KT O76290 193.2 Da LogP 0.98 TPSA 82.0 ✓ Ro5 ✓ Clean c1cc2c(cc1C(=O)N)sc(n2)N
6QT O76290 256.3 Da LogP 2.80 TPSA 66.8 ✓ Ro5 ✓ Clean c1cc(cc(c1)O)[C@H]2CC(=O)c3cc(ccc3O2)O
8M5 O54438 250.3 Da LogP 3.43 TPSA 34.0 ✓ Ro5 ✓ Clean Cn1cc(c2c1cccc2)C(=O)Nc3ccccc3
9KQ O54438 273.3 Da LogP 2.88 TPSA 56.5 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc3ccccc3c(n2)n4cnnc4
AOB O76290 277.3 Da LogP 1.88 TPSA 111.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C=Cc2c(c3c([nH]2)N=C(NC3=O)N)C#N
AX1 Q581W1 295.3 Da LogP 1.10 TPSA 129.8 ✓ Ro5 ✓ Clean c1cc2c(cc1c3c(c4c([nH]3)N=C(NC4=O)N)C#N)OCO2
AX2 Q581W1 126.1 Da LogP -1.38 TPSA 116.7 ✓ Ro5 ✓ Clean c1(nc(nc(n1)N)N)N
AX3 O76290 166.2 Da LogP -0.39 TPSA 102.7 ✓ Ro5 ✓ Clean C1CC1Nc2nc(nc(n2)N)N
AX4 O76290 232.3 Da LogP 2.10 TPSA 77.8 ✓ Ro5 ✓ Clean Cc1ccc(cc1)Sc2cc(nc(n2)N)N
AX5 O76290 232.3 Da LogP 1.93 TPSA 77.8 ✓ Ro5 ✓ Clean c1ccc(cc1)CSc2cc(nc(n2)N)N
AX6 Q581W1 262.3 Da LogP 1.94 TPSA 87.0 ✓ Ro5 ✓ Clean COc1ccc(cc1)CSc2cc(nc(n2)N)N
AX7 O76290 133.2 Da LogP 1.15 TPSA 54.7 ✓ Ro5 ✓ Clean c1ccc2c(c1)[nH]c(n2)N
CC6 O76290 286.2 Da LogP 2.28 TPSA 111.1 ✓ Ro5 ✓ Clean c1ccc(c(c1)C2=C(C(=O)c3c(cc(cc3O2)O)O)O)O
D1D Q581W1 152.2 Da LogP 0.10 TPSA 40.5 ✓ Ro5 ✓ Clean C1[C@H]([C@@H](CSS1)O)O
D64 O76290 250.3 Da LogP 2.77 TPSA 77.8 ✓ Ro5 ✓ Clean Cc1ccc(cc1)c2ccc3c(c2)c(nc(n3)N)N
DHF Q8I814 443.4 Da LogP 0.01 TPSA 211.9 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCC2=NC3=…
DTD O76290 152.2 Da LogP 0.10 TPSA 40.5 ✓ Ro5 ✓ Clean C1[C@@H]([C@H](CSS1)O)O
DTT Q581W1 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
DTU Q581W1 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@H]([C@H](CS)O)O)S
DTV Q581W1 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@H]([C@@H](CS)O)O)S
DX1 Q581W1 246.3 Da LogP 1.83 TPSA 103.6 ✓ Ro5 ✓ Clean CC(C)c1c(nc2c(n1)c(nc(n2)N)N)C(C)C
DX2 Q581W1 253.3 Da LogP 0.83 TPSA 129.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(nc3c(n2)c(nc(n3)N)N)N
DX3 Q581W1 206.3 Da LogP 0.94 TPSA 102.2 ✓ Ro5 ✓ Clean CC1=Nc2c(nc(nc2NC1(C)C)N)N
DX4 Q581W1 167.2 Da LogP 0.60 TPSA 83.4 ✓ Ro5 ✓ Clean c1[nH]c2c(n1)C(=S)NC(=N2)N
DX6 Q581W1 254.3 Da LogP 1.62 TPSA 87.6 ✓ Ro5 ✓ Clean c1ccc(cc1)CCc2c[nH]c3c2C(=O)NC(=N3)N
DX7 Q581W1 251.2 Da LogP 1.37 TPSA 111.3 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(c3c([nH]2)N=C(NC3=O)N)C#N
DX8 Q581W1 281.3 Da LogP 1.38 TPSA 120.6 ✓ Ro5 ✓ Clean COc1ccc(cc1)c2c(c3c([nH]2)N=C(NC3=O)N)C#N
EUB O76290 281.3 Da LogP 3.33 TPSA 71.9 ✓ Ro5 ✓ Clean c1cc(ccc1COc2ccc3c(c2)sc(n3)N)C#N
EUE O76290 228.3 Da LogP 1.28 TPSA 73.0 ✓ Ro5 ✓ Clean CS(=O)(=O)c1ccc2c(c1)sc(n2)N
EUH O76290 250.3 Da LogP 3.49 TPSA 38.9 ✓ Ro5 ✓ Clean c1cc2c(cc1SC(F)(F)F)sc(n2)N
EUK O76290 341.3 Da LogP 5.48 TPSA 38.9 1 viol. ✓ Clean c1cc(c(cc1CSc2ccc3c(c2)sc(n3)N)Cl)Cl
EV8 O76290 452.5 Da LogP 2.83 TPSA 114.6 ✓ Ro5 ✓ Clean COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)CNC(=O)c3ccc4c(…
EVW O76290 359.5 Da LogP 4.40 TPSA 68.0 ✓ Ro5 ✓ Clean c1ccc(cc1)C(c2ccccc2)NC(=O)c3ccc4c(c3)sc(n4)N
EVZ O76290 441.6 Da LogP 4.20 TPSA 85.5 ✓ Ro5 ✓ Clean COC(=O)C1CCN(CC1)C(=O)c2ccc(cc2)CSc3ccc4c(c3)sc…
EWK O76290 405.5 Da LogP 5.10 TPSA 68.0 1 viol. ✓ Clean c1ccc(cc1)CNC(=O)c2ccc(cc2)CSc3ccc4c(c3)sc(n4)N
EWT O76290 352.2 Da LogP 4.12 TPSA 68.0 ✓ Ro5 ✓ Clean c1cc(c(cc1CNC(=O)c2ccc3c(c2)sc(n3)N)Cl)Cl
FDB O76290 164.2 Da LogP 0.14 TPSA 87.6 ✓ Ro5 ✓ Clean Cc1c[nH]c2c1C(=O)NC(=N2)N
FOL O76290 441.4 Da LogP -0.04 TPSA 213.3 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cnc3c…
FQW O76290 330.4 Da LogP 3.29 TPSA 87.6 ✓ Ro5 ✓ Clean c1ccc(cc1)CCc2c3c([nH]c2c4ccccc4)N=C(NC3=O)N
FXE O54438 326.4 Da LogP 3.23 TPSA 77.4 ✓ Ro5 ✓ Clean Cn1c2cccc(c2c(n1)NC(=O)Nc3ccccc3OC)OC
GFE O76290 286.2 Da LogP 2.18 TPSA 80.0 ✓ Ro5 ✓ Clean CC1(N=C(N=C(N1c2ccc(c(c2)Cl)Cl)N)N)C
GJQ O76290 379.2 Da LogP 3.05 TPSA 123.1 ✓ Ro5 ✓ Clean c1cc(ccc1[C@@H]2N=C(N=C(N2c3ccc(c(c3)Cl)Cl)N)N)…
H0V O76290 253.3 Da LogP 1.91 TPSA 93.6 ✓ Ro5 ✓ Clean c1ccc(cc1)CCc2c[nH]c3c2c(nc(n3)N)N
IQW O76290 239.3 Da LogP 2.10 TPSA 93.6 ✓ Ro5 ✓ Clean Cc1ccc(cc1)c2c[nH]c3c2c(nc(n3)N)N
IZ9 O76290 290.3 Da LogP 2.47 TPSA 117.4 ✓ Ro5 ✓ Clean Cc1ccc(cc1)C=Cc2c(c3c(nc(nc3[nH]2)N)N)C#N
J2T O54438 252.3 Da LogP 1.75 TPSA 68.0 ✓ Ro5 ✓ Clean c1cc2c(cc1Nc3ccc4nnnn4n3)CCC2
JR2 O76290 203.2 Da LogP 1.14 TPSA 70.8 ✓ Ro5 ✓ Clean c1c[nH]c2c1c(nc(n2)N)N3CCCC3
JU2 Q581W1 254.0 Da LogP 0.47 TPSA 111.3 ✓ Ro5 ✓ Clean C(#N)c1c2c([nH]c1Br)N=C(NC2=O)N
JUO O76290 260.3 Da LogP 0.96 TPSA 94.6 ✓ Ro5 ✓ Clean c1c(c2c([nH]1)nc(nc2N3CCSCC3)N)C#N
KP2 O76290 225.3 Da LogP 1.79 TPSA 93.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c[nH]c3c2c(nc(n3)N)N
KTZ O76290 329.4 Da LogP 3.94 TPSA 70.8 ✓ Ro5 ✓ Clean CN(C)c1c2c(c([nH]c2nc(n1)N)c3ccccc3)c4ccccc4
LYA O76290 427.4 Da LogP 0.67 TPSA 191.3 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H…
M2N O76290 301.4 Da LogP 3.46 TPSA 93.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c3c(nc(nc3[nH]c2c4ccccc4)N)N
M4V O76290 381.2 Da LogP 3.93 TPSA 87.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c3c([nH]c2c4ccc(cc4)Br)N=C(NC3=O)N
MCV O76290 330.4 Da LogP 2.66 TPSA 96.3 ✓ Ro5 ✓ Clean COc1ccc(c(c1)CCc2csc3c2c(nc(n3)N)N)OC
MTX Q8I814 454.4 Da LogP 0.27 TPSA 210.5 ✓ Ro5 ✓ Clean CN(Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)N[C@@…
N0Z O76290 215.2 Da LogP 0.98 TPSA 113.8 ✓ Ro5 ✓ Clean c1cc2c(cc1O)c3c(nc(nc3[nH]2)N)N
NKH O54438 342.8 Da LogP 4.16 TPSA 60.5 ✓ Ro5 ✓ Clean COc1cc(c(cc1Cl)OC)NC(=O)c2cccc3c2nccc3
NWJ O76290 332.4 Da LogP 2.49 TPSA 111.7 ✓ Ro5 ✓ Clean c1cc(cc(c1)c2c(c3c([nH]2)nc(nc3N4CCCC4)N)C#N)C=O
O74 O54438 347.8 Da LogP 4.53 TPSA 53.5 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=N/C(=C/3\C=CC=CC3=O)/N2)Nc4ccccc4…
OZJ O76290 278.3 Da LogP 1.47 TPSA 134.5 ✓ Ro5 ✓ Clean c1cc(cc(c1)c2c(c3c(nc(nc3[nH]2)N)N)C#N)C=O
Q0K O76290 240.3 Da LogP 1.81 TPSA 87.6 ✓ Ro5 ✓ Clean Cc1ccc(cc1)c2c[nH]c3c2C(=O)NC(=N3)N
Q7U O54438 300.7 Da LogP 3.87 TPSA 59.0 ✓ Ro5 ✓ Clean Cn1c2ccccc2nc1NC(=O)Nc3ccccc3Cl
THJ A3DFK9 112.1 Da LogP -1.01 TPSA 57.2 ✓ Ro5 ✓ Clean [O-]S(=O)(=O)[S-]
TMQ O76290 370.4 Da LogP 2.16 TPSA 118.8 ✓ Ro5 Alert Cc1c(ccc2c1c(nc([nH+]2)N)N)CNc3cc(c(c(c3)OC)OC)…
U98 O54438 317.3 Da LogP 2.49 TPSA 85.1 ✓ Ro5 ✓ Clean c1cc(cc(c1)Nc2c(cccn2)S(=O)(=O)N)C(F)(F)F
UEN O76290 325.4 Da LogP 4.09 TPSA 79.6 ✓ Ro5 ✓ Clean c1cc(ccc1c2c[nH]c3c2c(nc(n3)N)NC4CCCCC4)F
UHX O76290 349.4 Da LogP 3.60 TPSA 102.8 ✓ Ro5 ✓ Clean COc1ccc(cc1)c2c3c(nc(nc3[nH]c2c4ccc(cc4)F)N)N
UIH O76290 380.2 Da LogP 4.22 TPSA 93.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c3c(nc(nc3[nH]c2c4ccc(cc4)Br)N)N
VGD O76290 167.6 Da LogP 1.80 TPSA 54.7 ✓ Ro5 ✓ Clean c1cc2c(cc1Cl)[nH]c(n2)N
VGF O76290 368.3 Da LogP 5.64 TPSA 43.8 1 viol. ✓ Clean c1ccc(cc1)c2cccc3c2n(c(n3)N)Cc4ccc(c(c4)Cl)Cl
VS8 O76290 383.5 Da LogP 5.62 TPSA 79.6 1 viol. ✓ Clean c1ccc(cc1)c2c3c([nH]c2c4ccccc4)nc(nc3NC5CCCCC5)N
W16 Q581W1 163.6 Da LogP 0.90 TPSA 51.8 ✓ Ro5 ✓ Clean C(CCl)c1nnc(s1)N
W8G O76290 235.3 Da LogP 1.09 TPSA 70.8 ✓ Ro5 ✓ Clean c1c[nH]c2c1c(nc(n2)N)N3CCSCC3
WHF O76290 239.3 Da LogP 2.00 TPSA 68.9 ✓ Ro5 ✓ Clean c1cc(sc1)C(=O)CCc2nnc(s2)N
WI4 O54438 271.7 Da LogP 3.06 TPSA 55.6 ✓ Ro5 ✓ Clean c1ccc(c(c1)Nc2ncnc(n2)n3cccc3)Cl
XP0 O76290 303.4 Da LogP 2.54 TPSA 70.8 ✓ Ro5 ✓ Clean c1ccc(cc1)C#Cc2c[nH]c3c2c(nc(n3)N)N4CCCC4
YGL O76290 302.3 Da LogP 3.17 TPSA 87.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c3c([nH]c2c4ccccc4)N=C(NC3=O)N

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.