Protein profile

KP13_04365

hypothetical protein

Genome: KpKP13

Gene: AHE44903.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GWK1
Amino acids 289
Annotations 2
Features 10
PDB binders 19
Druggability 0.754

Overview

Basic information about this protein and its source genome.

Accession
KP13_04365
Gene
AHE44903.1
Status
annotated
Amino acids
289
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
92.74

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.754
Structure A0A0H3GWK1
Pocket Pocket 4
P2Rank 0.691
Structure A0A0H3GWK1
Pocket Pocket 1
ColabFold model
FPocket 0.303 · Pocket 1
P2Rank 0.789 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 5 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
47 247 SMART SM00849 Lactamase_B_5a
47 247 InterPro IPR001279 Metallo-beta-lactamase
1 280 Gene3D G3DSA:3.60.15.10 -
1 280 InterPro IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
38 255 CDD cd16277 metallo-hydrolase-like_MBL-fold
47 238 Pfam PF00753 Metallo-beta-lactamase superfamily
47 238 InterPro IPR001279 Metallo-beta-lactamase
43 260 PANTHER PTHR42978 QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED
44 266 SUPERFAMILY SSF56281 Metallo-hydrolase/oxidoreductase
44 266 InterPro IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GWK1
AlphaFold full sequence Viewing
ColabFold KP13_04365
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.754
6 0.449
1 0.438

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 8.92 0.478
2 1.42 0.018
3 0.94 0.005

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

106 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3C7 P52700 237.4 Da LogP 0.82 TPSA 40.5 ✓ Ro5 ✓ Clean C1[C@H](N2[C@@H](S1)CS[C@@H]2CS)C(=O)O
3P7 B2FTM1 406.3 Da LogP -0.34 TPSA 171.8 ✓ Ro5 ✓ Clean CO[C@@](C=O)([C@@H]1N=C(C(=C)CO1)C(=O)O)NC(=O)[…
3R9 P52700 237.4 Da LogP 0.82 TPSA 40.5 ✓ Ro5 ✓ Clean C1[C@@H](N2[C@H](S1)CS[C@H]2CS)C(=O)O
60M P52700 217.1 Da LogP 0.46 TPSA 107.7 ✓ Ro5 ✓ Clean c1cc(nc(c1)C(=O)O)CP(=O)(O)O
60N P52700 233.1 Da LogP -0.05 TPSA 128.0 ✓ Ro5 ✓ Clean c1cc(nc(c1)C(=O)O)[C@@H](O)P(=O)(O)O
C6L I7HB71 217.3 Da LogP 0.52 TPSA 86.6 ✓ Ro5 ✓ Clean CCCCCC(=O)N[C@@H](CCO)C(=O)O
HIW B2FTM1 317.4 Da LogP -0.34 TPSA 143.1 ✓ Ro5 ✓ Clean [H]/N=C\NCCS[C@H]1C[C@@H](N=C1C(=O)O)[C@@H]([C@…
I38 P52700 177.2 Da LogP -0.10 TPSA 66.4 ✓ Ro5 ✓ Clean C[C@H](C(=O)O)NC(=O)CCS
L13 P52700 206.3 Da LogP 1.63 TPSA 59.6 ✓ Ro5 ✓ Clean Cc1ccccc1C2=NNC(=S)N2N
L3B P52700 189.2 Da LogP 2.49 TPSA 37.1 ✓ Ro5 ✓ Clean Cc1ccccc1C2=NC(=S)N=N2
LMP B2FTM1 401.5 Da LogP -0.47 TPSA 139.5 ✓ Ro5 ✓ Clean C[C@H]1[C@@H](C(=N[C@H]1[C@@H]([C@@H](C)O)C(=O)…
MCO P52700 217.3 Da LogP 0.63 TPSA 57.6 ✓ Ro5 ✓ Clean C[C@H](CS)C(=O)N1CCC[C@@H]1C(=O)O
MP2 P52700 312.3 Da LogP 0.41 TPSA 104.7 ✓ Ro5 ✓ Clean c1ccc(cc1)COC(=O)N[C@@H](CS)C(=O)NCC(=O)O
MX1 P52700 422.3 Da LogP -0.46 TPSA 192.0 ✓ Ro5 ✓ Clean CO[C@]([C@@H]1N=C(C(=C)CO1)C(=O)O)(C(=O)O)NC(=O…
PHN P52700 180.2 Da LogP 2.78 TPSA 25.8 ✓ Ro5 ✓ Clean c1cc2ccc3cccnc3c2nc1
VC2 P52700 265.4 Da LogP 1.60 TPSA 40.5 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)CS[C@H]2CS)C(=O)O)C
VI P52700 308.3 Da LogP 2.94 TPSA 92.4 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(c(n(n2)c3ccccc3)C(=O)O)C(=O)O
VII P52700 308.3 Da LogP 4.01 TPSA 87.7 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(c(c(o2)c3ccccc3)C(=O)O)C(=O)O
X8Z B2FTM1 217.3 Da LogP 0.63 TPSA 57.6 ✓ Ro5 ✓ Clean C[C@H](CS)C(=O)N1CCC[C@H]1C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.