Protein profile

KP13_03061

putative ThiJ/PfpI family peptidase

Genome: KpKP13

Gene: AHE44934.1 Structure source: AlphaFold + ColabFold UniProt A0A422WBG0
Amino acids 182
Annotations 0
Features 12
PDB binders 3
Druggability 0.4

Overview

Basic information about this protein and its source genome.

Accession
KP13_03061
Gene
AHE44934.1
Status
annotated
Amino acids
182
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Periplasmic
ColabFold pLDDT
98.31

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.4
Structure A0A422WBG0
Pocket Pocket 8
P2Rank 0.201
Structure A0A422WBG0
Pocket Pocket 1
ColabFold model
FPocket 0.496 · Pocket 1
P2Rank 0.202 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 161 / 4744 genomes with a hit
Normalized 0.034

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

12 records
Show feature table
Start End DB Term Name
1 180 CDD cd03169 GATase1_PfpI_1
1 181 ProSiteProfiles PS51276 PfpI endopeptidase domain profile.
1 181 InterPro IPR006286 Deglycase PfpI-like
2 180 NCBIfam TIGR01382 DJ-1/PfpI/YhbO family deglycase/protease
2 180 InterPro IPR006286 Deglycase PfpI-like
1 180 SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like
1 180 InterPro IPR029062 Class I glutamine amidotransferase-like
1 182 Gene3D G3DSA:3.40.50.880 -
1 182 InterPro IPR029062 Class I glutamine amidotransferase-like
1 176 Pfam PF01965 DJ-1/PfpI family
1 176 InterPro IPR002818 DJ-1/PfpI
1 181 PANTHER PTHR42733 DJ-1 PROTEIN

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A422WBG0
AlphaFold full sequence Viewing
ColabFold KP13_03061
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
8 0.4

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 3.84 0.15

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

3 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2HA O59413 90.1 Da LogP -1.46 TPSA 57.5 ✓ Ro5 ✓ Clean C(C(=O)CO)O
7MT O59413 556.4 Da LogP -2.25 TPSA 64.8 1 viol. ✓ Clean c1cc2[n+]3c(c1)C(=O)O[Tb]34567[n+]8c(cccc8C(=O)…
MLI O59413 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.