Protein target profile

KP13_05360

putative hydroxypyruvate reductase

Genome: KpKP13 Gene: AHE45007.1 ttuD 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3GS22
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Length 419
Pocket druggability 0.477
Functional annotation 0 EC 2 GO
Target summary

Target candidate with partial support; inspect missing evidence before prioritizing.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Main supporting evidence

Moderate predicted binding pocket FPocket selected-pocket score 0.48. This supports review but is not experimental validation. Second pocket predictor agrees P2Rank predicted binding-site probability 0.93. Structure available AlphaFold DB model + ColabFold model

Risks to review

Human similarity Top human hit identity: 44.076%. This target also has a predicted binding pocket (FPocket 0.48) — check the ligand evidence before deprioritizing on off-target risk alone. Microbiome similarity 24 of 4744 screened genomes (0.5%) have a significant similarity hit. This target also has a predicted binding pocket (FPocket 0.48) — check the ligand evidence before deprioritizing on off-target risk alone. Mixed conservation Core/accessory calls are not fully concordant.

Evidence gaps

No metabolic context No SBML/network-derived reaction evidence is loaded for this protein. No ligand evidence No experimental PDB ligands, measured ChEMBL bioactivity, or proposed ZINC compound records are available.
Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
44.076 Lower values reduce human off-target concern.
Human E-value
1.0099999999999999e-38
Gut microbiome similarity
0.5% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
0.0 Higher values support similarity to known essential genes.

Localization

Localization
Cytoplasmic

Structure confidence

ColabFold pLDDT
94.62 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.477
Structure A0A0H3GS22
Pocket Pocket 10
P2Rank 0.926
Structure A0A0H3GS22
Pocket Pocket 1
ColabFold model
FPocket 0.347 · Pocket 11
P2Rank 0.912 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 24 / 4744 genomes with a hit
Prevalence 0.5%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Sequence

UniProt A0A0H3GS22

Sequence

Primary amino-acid sequence viewer.

MNNEQAAEILQDIFQHAVNSARAGPVTLANLPEKPRGRCVVIGAGKASAAMAAAVDAAWPDVAVSGVVVTRYGYAVPAGRIRIIEAAHPVSDAMSEVAAMLIVETLRGLTADDLVLALISGGGSALMALPAPGLTLADKQTITRALLHSGASIKEMNLVRRHLSAVKGGKLATMAQPARIVSLIISDVPGDDPTDVASGPTVADNSAPRDALRVLQRYGIAIPKPVSERLNQPAGPVENAATGEVRLIATPAMALAAAGLAARQHGLTPLILGDAIEGESREVAVVMAGMAKSAKQYGHPISGPAVLLSGGETTVTVNNTPPGKGGRNTEFLLSLACALQGEHGIWAMAGDSDGIDGTEDAAGAIVFPDTLARGKLSGLNAVQYLDGHDSYCYFHALNDLLITGPTLTNVNDIRAILIA

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0008887 Catalysis of the reaction: D-glycerate + ATP = 3-phospho-D-glycerate + ADP + 2 H+.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

11 records
Show feature table
Start End DB Term Name
306 412 Pfam PF05161 MOFRL family
306 412 InterPro IPR007835 MOFRL domain
238 419 Gene3D G3DSA:3.40.1480.10 MOFRL domain
238 419 InterPro IPR037035 Glycerate kinase-like, C-terminal domain superfamily
7 418 PANTHER PTHR12227 GLYCERATE KINASE
7 418 InterPro IPR039760 MOFRL domain-containing protein
26 237 Gene3D G3DSA:3.40.50.10180 -
26 237 InterPro IPR038614 Glycerate kinase, N-terminal domain superfamily
10 230 Pfam PF13660 Domain of unknown function (DUF4147)
10 230 InterPro IPR025286 MOFRL-associated domain
7 418 SUPERFAMILY SSF82544 GckA/TtuD-like

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #10
0.477
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Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.926
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Surrounding area
Site 2 P2Rank #2
0.406
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Surrounding area
Site 3 P2Rank #3
0.019
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Surrounding area
Site 4 P2Rank #4
0.015
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Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GS22
AlphaFold DB — — full sequence — Viewing
ColabFold KP13_05360
ColabFold — — full sequence — Loaded