Protein profile

KP13_05367

Short-chain dehydrogenase/reductase SDR protein

Genome: KpKP13

Gene: AHE45014.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GW04
Amino acids 260
Annotations 1
Features 14
PDB binders 31
Druggability 0.282

Overview

Basic information about this protein and its source genome.

Accession
KP13_05367
Gene
AHE45014.1
Status
annotated
Amino acids
260
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
26.437
Human E-value
3.41e-06
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Extracellular
ColabFold pLDDT
91.06

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.282
Structure A0A0H3GW04
Pocket Pocket 18
P2Rank 0.916
Structure A0A0H3GW04
Pocket Pocket 1
ColabFold model
FPocket 0.479 · Pocket 3
P2Rank 0.876 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 8 / 4744 genomes with a hit
Normalized 0.002

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016616 Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
32 260 PANTHER PTHR45458 SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR
21 260 Gene3D G3DSA:3.40.50.720 -
31 260 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
31 260 InterPro IPR036291 NAD(P)-binding domain superfamily
105 116 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
105 116 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
33 50 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
33 50 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
203 220 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
203 220 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
182 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
182 201 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
32 220 Pfam PF00106 short chain dehydrogenase
32 220 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GW04
AlphaFold full sequence Viewing
ColabFold KP13_05367
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
18 0.282

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 9.13 0.489
2 5.25 0.245
3 3.88 0.152

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

181 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
34X O54438 311.3 Da LogP 3.05 TPSA 85.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2cn(c(n2)N)NC(=O)Nc3ccccc3F
36E O54438 186.1 Da LogP 2.58 TPSA 28.7 ✓ Ro5 ✓ Clean c1ccc2c(c1)[nH]c(n2)C(F)(F)F
36G O54438 282.3 Da LogP 3.68 TPSA 41.6 ✓ Ro5 ✓ Clean COc1ccccc1NC(=O)N2CCCc3c2cccc3
36I O54438 297.4 Da LogP 3.19 TPSA 38.2 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc3ccsc3c(n2)N4CCOCC4
36K O54438 310.4 Da LogP 3.71 TPSA 68.2 ✓ Ro5 ✓ Clean CCn1c2ccccc2nc1NC(=O)Nc3ccccc3OC
36P O54438 312.4 Da LogP 4.07 TPSA 33.2 ✓ Ro5 ✓ Clean c1ccc2c(c1)CCN2C(=O)c3csc(n3)c4ccsc4
3X3 O54438 318.3 Da LogP 3.50 TPSA 66.0 ✓ Ro5 ✓ Clean c1ccc(cc1)n2nc(nn2)c3ccccc3OCc4ccco4
5SD P14061 288.4 Da LogP 4.17 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
8M5 O54438 250.3 Da LogP 3.43 TPSA 34.0 ✓ Ro5 ✓ Clean Cn1cc(c2c1cccc2)C(=O)Nc3ccccc3
9KQ O54438 273.3 Da LogP 2.88 TPSA 56.5 ✓ Ro5 ✓ Clean c1ccc(cc1)c2nc3ccccc3c(n2)n4cnnc4
AND P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CCC2=O)CC=C4[C@@]3(…
AOM P14061 292.5 Da LogP 3.75 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4…
ASD P14061 286.4 Da LogP 4.09 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C=C1CC[C@@H]3[C@@H]2CC[C@]4([C@H]…
DHT P14061 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
E2B P14061 405.5 Da LogP 4.18 TPSA 83.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
EM9 P14061 560.3 Da LogP 8.21 TPSA 60.8 2 viol. ✓ Clean CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3…
EQI P14061 268.4 Da LogP 3.74 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC=C3[C@@H]1CCC2=O)O
EST P14061 272.4 Da LogP 3.61 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@H…
F0A P14061 435.6 Da LogP 4.19 TPSA 92.8 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4cc(c(cc4CC[C@H]3[C@@H]1C[C@@H…
F0D P14061 496.5 Da LogP 5.41 TPSA 63.3 1 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
FXE O54438 326.4 Da LogP 3.23 TPSA 77.4 ✓ Ro5 ✓ Clean Cn1c2cccc(c2c(n1)NC(=O)Nc3ccccc3OC)OC
HYC P14061 677.8 Da LogP 4.54 TPSA 186.1 2 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
J2T O54438 252.3 Da LogP 1.75 TPSA 68.0 ✓ Ro5 ✓ Clean c1cc2c(cc1Nc3ccc4nnnn4n3)CCC2
J3Z P14061 270.4 Da LogP 3.82 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)O
NCA Q9HWU9 122.1 Da LogP 0.18 TPSA 56.0 ✓ Ro5 ✓ Clean c1cc(cnc1)C(=O)N
NKH O54438 342.8 Da LogP 4.16 TPSA 60.5 ✓ Ro5 ✓ Clean COc1cc(c(cc1Cl)OC)NC(=O)c2cccc3c2nccc3
O74 O54438 347.8 Da LogP 4.53 TPSA 53.5 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=N/C(=C/3\C=CC=CC3=O)/N2)Nc4ccccc4…
Q7U O54438 300.7 Da LogP 3.87 TPSA 59.0 ✓ Ro5 ✓ Clean Cn1c2ccccc2nc1NC(=O)Nc3ccccc3Cl
TES P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=CC(…
U98 O54438 317.3 Da LogP 2.49 TPSA 85.1 ✓ Ro5 ✓ Clean c1cc(cc(c1)Nc2c(cccn2)S(=O)(=O)N)C(F)(F)F
WI4 O54438 271.7 Da LogP 3.06 TPSA 55.6 ✓ Ro5 ✓ Clean c1ccc(c(c1)Nc2ncnc(n2)n3cccc3)Cl

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.