KpKP13 Protein target profile

Putative thiosulfate sulfurtransferase

Accession: KP13_05408

Gene: AHE45052.1 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3GRI8
Length 435
Pocket druggability (P2Rank · AlphaFold DB model) 0.745
Direct ligand evidence 0 65 total records
Functional annotation 0 EC 2 GO
Target summary

Target candidate with partial support; inspect missing evidence before prioritizing.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
28.383 Lower values reduce human off-target concern.
Human E-value
4.61e-19
Gut microbiome similarity
1.3% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
0.0 Higher values support similarity to known essential genes.

Structure confidence

ColabFold pLDDT
94.27 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

P2Rank's binding-site probability is the primary druggability signal shown across the app; FPocket's druggability score is shown alongside it for comparison. Both estimate small-molecule pocket quality after applying the curated structure priority — neither is experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

Druggability (P2Rank) 0.745
Structure A0A0H3GRI8
Pocket Pocket 1
Druggability (FPocket) 0.142
Structure A0A0H3GRI8
Pocket Pocket 5
ColabFold model
P2Rank 0.718 · Pocket 1
FPocket 0.276 · Pocket 21
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 60 / 4744 genomes with a hit
Prevalence 1.3%

Sequence

Primary amino-acid sequence viewer.

MKRVSQLTALALLMGLAASTTCAAETMPALTLSHLQQQHGVAIDTRLSAYYNGWPQRASGPEGHEPQALNLSARWLGAMSDDQLRAWAKQHQLQSDTPIALYGSPEDNVSVAARLKQTGFTRLSTLSDALSQTDRLQKLPHFEQLVYPQWLHDLQQGKAVAAAPAGDWKVFEAAWGAPKLYLLSHIPGAGYIDTNEVESEPLWNKVSDAQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGMPPAQQPAPDFGAPIPGQPQLMLDTEQARGLLHRQDASLVSVRSWPEFIGTTSGYSYIKPKGDIAGARWGHAGSDSTHMEDFHNPDGTMRSADDIATLWRQWNILPSQQVAFYCGTGWRASETFMYARAMGWPHVAVYDGGWYEWSSNPHNPVARGERGPESSQ

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Subcellular localization

Localization
Periplasmic

Gene Ontology (GO)

2
  • GO:0016783 Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor).
  • GO:0004792 Catalysis of the reaction: thiosulfate + hydrogen cyanide = thiocyanate + sulfite + 2 H+.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

45 records
Show feature table
Start End DB Term Name
285 435 Gene3D G3DSA:3.40.250.10 -
285 435 InterPro IPR036873 Rhodanese-like domain superfamily
1 24 SignalP_EUK SignalP-noTM SignalP-noTM
32 126 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
32 126 InterPro IPR036873 Rhodanese-like domain superfamily
36 138 ProSiteProfiles PS50206 Rhodanese domain profile.
36 138 InterPro IPR001763 Rhodanese-like domain
304 425 ProSiteProfiles PS50206 Rhodanese domain profile.
304 425 InterPro IPR001763 Rhodanese-like domain
140 426 PANTHER PTHR11364 THIOSULFATE SULFERTANSFERASE
140 426 InterPro IPR045078 Sulfurtransferase TST/MPST-like
294 422 SMART SM00450 rhod_4
294 422 InterPro IPR001763 Rhodanese-like domain
146 267 SMART SM00450 rhod_4
146 267 InterPro IPR001763 Rhodanese-like domain
26 139 SMART SM00450 rhod_4
26 139 InterPro IPR001763 Rhodanese-like domain
1 23 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
139 283 Gene3D G3DSA:3.40.250.10 -
139 283 InterPro IPR036873 Rhodanese-like domain superfamily
173 270 ProSiteProfiles PS50206 Rhodanese domain profile.
173 270 InterPro IPR001763 Rhodanese-like domain
284 435 FunFam G3DSA:3.40.250.10:FF:000043 Sulfurtransferase
1 6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
1 23 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
406 416 ProSitePatterns PS00683 Rhodanese C-terminal signature.
406 416 InterPro IPR001307 Thiosulphate sulfurtransferase, conserved site
141 274 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
141 274 InterPro IPR036873 Rhodanese-like domain superfamily
19 23 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
24 435 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
295 418 CDD cd01449 TST_Repeat_2
180 263 Pfam PF00581 Rhodanese-like domain
180 263 InterPro IPR001763 Rhodanese-like domain
297 418 Pfam PF00581 Rhodanese-like domain
297 418 InterPro IPR001763 Rhodanese-like domain
21 138 Gene3D G3DSA:3.40.250.10 -
21 138 InterPro IPR036873 Rhodanese-like domain superfamily
145 265 CDD cd01448 TST_Repeat_1
289 429 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
289 429 InterPro IPR036873 Rhodanese-like domain superfamily
1 23 Phobius SIGNAL_PEPTIDE Signal peptide region
181 192 ProSitePatterns PS00380 Rhodanese signature 1.
181 192 InterPro IPR001307 Thiosulphate sulfurtransferase, conserved site
7 18 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · P2Rank

Druggability (P2Rank): high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Pocket 1 P2Rank #1
0.745
Show in viewer
Surrounding area
Pocket 2 P2Rank #2
0.303
Show in viewer
Surrounding area
Pocket 3 P2Rank #3
0.14
Show in viewer
Surrounding area
Pocket 4 P2Rank #4
0.132
Show in viewer
Surrounding area
Pocket 5 P2Rank #5
0.114
Show in viewer
Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GRI8
AlphaFold DB full sequence Viewing
ColabFold KP13_05408
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

65 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 15 records from similar proteins
Structural ligands 7 0 loaded crystals
Measured bioactivity 8 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
AVJ PDB via homolog 198.2 Da · LogP 0.11 · TPSA 66.0 Open detail RCSB PDB
DV6 PDB via homolog Detail RCSB PDB
LPB PDB via homolog Detail RCSB PDB
LW8 PDB via homolog Detail RCSB PDB
PE4 PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
AVJ RCSB PDB B3ECE3 198.2 Da LogP 0.11 TPSA 66.0 ✓ Ro5 ✓ Clean C[N+](C)(C)[C@@H](Cc1cnc[nH]1)C(=O)O
DV6 RCSB PDB B3ECE3 264.4 Da LogP 0.43 TPSA 61.4 ✓ Ro5 ✓ Clean C[N+](C)(C)[C@@H](CC1=CN[C@@H](N1)SS)C(=O)O
LPB RCSB PDB P00586 206.3 Da LogP 2.79 TPSA 37.3 ✓ Ro5 ✓ Clean C1CSS[C@H]1CCCCC(=O)O
LW8 RCSB PDB B3ECE3 230.3 Da LogP 0.77 TPSA 68.9 ✓ Ro5 ✓ Clean C[N+](C)(C)[C@@H](CC1=CNC(=S)N1)C(=O)O
PE4 RCSB PDB P78067 354.4 Da LogP 0.11 TPSA 84.8 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCCOCCOCCO
PG0 RCSB PDB P78067 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO
PYR RCSB PDB P25325 88.1 Da LogP -0.34 TPSA 54.4 ✓ Ro5 ✓ Clean CC(=O)C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.