Protein profile

KP13_04067

Isochorismatase-like protein

Genome: KpKP13

Gene: AHE45133.1 Structure source: AlphaFold + ColabFold UniProt A0A486V8D6
Amino acids 181
Annotations 2
Features 8
PDB binders 5
Druggability 0.379

Overview

Basic information about this protein and its source genome.

Accession
KP13_04067
Gene
AHE45133.1
Status
annotated
Amino acids
181
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
95.98

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.379
Structure A0A486V8D6
Pocket Pocket 7
P2Rank 0.353
Structure A0A486V8D6
Pocket Pocket 1
ColabFold model
FPocket 0.392 · Pocket 3
P2Rank 0.243 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 15 / 4744 genomes with a hit
Normalized 0.003

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 1 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

1
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.

Sequence Features

Domain/signature hits from InterPro and related databases.

8 records
Show feature table
Start End DB Term Name
2 174 Gene3D G3DSA:3.40.50.850 -
2 174 InterPro IPR036380 Isochorismatase-like superfamily
4 147 PANTHER PTHR43540 PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED
5 159 SUPERFAMILY SSF52499 Isochorismatase-like hydrolases
5 159 InterPro IPR036380 Isochorismatase-like superfamily
7 158 CDD cd01014 nicotinamidase_related
7 147 Pfam PF00857 Isochorismatase family
7 147 InterPro IPR000868 Isochorismatase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A486V8D6
AlphaFold full sequence Viewing
ColabFold KP13_04067
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
7 0.379

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 5.61 0.269

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

9 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
66Y A0A0K0XHU0 109.1 Da LogP 0.06 TPSA 29.1 ✓ Ro5 ✓ Clean C1[C@@H]2C=C[C@H]1NC2=O
66Z A0A0K0XHU0 109.1 Da LogP 0.06 TPSA 29.1 ✓ Ro5 ✓ Clean C1[C@H]2C=C[C@@H]1NC2=O
HX2 Q9I4D6 118.2 Da LogP 0.53 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@H](CC[C@@H](C)O)O
NH4 A6TWT6 18.0 Da LogP 0.38 TPSA 36.5 ✓ Ro5 ✓ Clean [NH4+]
ROP Q9I4D6 73.1 Da LogP -0.12 TPSA 43.1 ✓ Ro5 ✓ Clean CCC(=O)N

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.