Protein profile

KP13_04918

Acyl carrier protein

Genome: KpKP13

Gene: AHE45278.1 acpP Structure source: AlphaFold + ColabFold UniProt A0A0H3GVI1
Amino acids 78
Annotations 7
Features 17
PDB binders 33
Druggability 0.283

Overview

Basic information about this protein and its source genome.

Accession
KP13_04918
Gene
AHE45278.1 acpP
Status
annotated
Amino acids
78
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
51.923
Human E-value
2.27e-13
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
100.0
DEG E-value
2.18e-51
Localization
Cytoplasmic
ColabFold pLDDT
89.99

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.283
Structure A0A0H3GVI1
Pocket Pocket 1
P2Rank
Structure A0A0H3GVI1
Pocket No pockets
ColabFold model
FPocket 0.319 · Pocket 3
P2Rank 0.013 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 2069 / 4744 genomes with a hit
Normalized 0.436

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

7 GO

Gene Ontology (GO)

7
  • GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0000035 Binding to an acyl group, any group formally derived by removal of the hydroxyl group from the acid function of a carboxylic acid.
  • GO:0000036 Binding an acyl group and presenting it for processing or offloading to a cognate enzyme. Covalently binds the acyl group via a phosphopantetheine prosthetic group and mediates protein-protein interactions with the enzyme conferring specificity. The acyl carrier protein (ACP) presents substrates to enzymes involved in fatty acid biosynthesis or in polyketide secondary metabolite biosynthesis.
  • GO:0036104 The chemical reactions and pathways resulting in the formation of Kdo2-lipid A, a lipopolysaccharide (LPS) component.
  • GO:0009245 The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
2 77 ProSiteProfiles PS50075 Carrier protein (CP) domain profile.
2 77 InterPro IPR009081 Phosphopantetheine binding ACP domain
1 78 FunFam G3DSA:1.10.1200.10:FF:000001 Acyl carrier protein
2 77 SUPERFAMILY SSF47336 ACP-like
2 77 InterPro IPR036736 ACP-like superfamily
3 77 Hamap MF_01217 Acyl carrier protein [acpP].
3 77 InterPro IPR003231 Acyl carrier protein (ACP)
32 47 ProSitePatterns PS00012 Phosphopantetheine attachment site.
32 47 InterPro IPR006162 Phosphopantetheine attachment site
2 77 PANTHER PTHR20863 ACYL CARRIER PROTEIN
2 77 InterPro IPR003231 Acyl carrier protein (ACP)
1 78 Gene3D G3DSA:1.10.1200.10 -
1 78 InterPro IPR036736 ACP-like superfamily
1 77 NCBIfam TIGR00517 acyl carrier protein
1 77 InterPro IPR003231 Acyl carrier protein (ACP)
6 73 Pfam PF00550 Phosphopantetheine attachment site
6 73 InterPro IPR009081 Phosphopantetheine binding ACP domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GVI1
AlphaFold full sequence Viewing
ColabFold KP13_04918
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.283

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

84 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q6C7X2 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
6W5 P0A6A8 395.3 Da LogP -1.59 TPSA 174.3 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCNC(=O)…
8Q1 P0A6A8 540.7 Da LogP 3.29 TPSA 162.3 1 viol. ✓ Clean CCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)…
9EF P0A6A8 383.3 Da LogP -1.76 TPSA 174.3 1 viol. ✓ Clean CC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)…
CAC P0A6A8 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
CDL Q6C7X2 1464.1 Da LogP 23.31 TPSA 242.6 3 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)([O-])OCC(…
CPL Q6C7X2 758.1 Da LogP 10.94 TPSA 111.2 2 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)([O-])OC…
DTT P0A6A8 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
EDT P0A6A8 292.2 Da LogP -2.07 TPSA 155.7 ✓ Ro5 ✓ Clean C(CN(CC(=O)O)CC(=O)O)N(CC(=O)O)CC(=O)O
EHZ Q6C7X2 584.7 Da LogP 3.04 TPSA 182.5 2 viol. ✓ Clean CCCCCCCCCCC[C@@H](CC(=O)SCCNC(=O)CCNC(=O)[C@@H]…
ETE P0A6A8 208.3 Da LogP -0.33 TPSA 57.2 ✓ Ro5 ✓ Clean COCCOCCOCCOCCO
FES Q6C7X2 175.8 Da LogP 1.29 TPSA 0.0 ✓ Ro5 ✓ Clean S1[Fe]S[Fe]1
G9S P0A6A8 596.8 Da LogP 4.85 TPSA 162.3 1 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)…
LMN Q6C7X2 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@@H]1[C@@H]([C@@H](…
LMT Q6C7X2 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
MLI O77077 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
MRJ P0A6A8 523.6 Da LogP 2.14 TPSA 174.3 2 viol. ✓ Clean CCCCCCCCCCCC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)…
MU4 P0A6A8 579.7 Da LogP 3.70 TPSA 174.3 2 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C…
P15 P0A6A8 296.4 Da LogP -0.29 TPSA 75.6 ✓ Ro5 ✓ Clean COCCOCCOCCOCCOCCOCCO
PLC Q6C7X2 622.8 Da LogP 8.12 TPSA 108.4 2 viol. ✓ Clean CCCCCCCCCCCC(=O)OC[C@H](CO[P@](=O)(O)OCC[N+](C)…
PM4 P0A6A8 440.5 Da LogP 1.23 TPSA 142.0 ✓ Ro5 ✓ Clean CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@H…
PM5 P0A6A8 454.5 Da LogP 1.62 TPSA 142.0 ✓ Ro5 ✓ Clean CCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@…
PM8 P0A6A8 496.6 Da LogP 2.80 TPSA 142.0 ✓ Ro5 ✓ Clean CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO…
PN7 B6JLE2 358.4 Da LogP -0.96 TPSA 145.2 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCS)O
PNS P0A6A8 358.4 Da LogP -0.96 TPSA 145.2 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS)O
PSC Q6C7X2 759.1 Da LogP 11.58 TPSA 108.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)(O)OCC[N…
PSR P0A6A8 428.4 Da LogP 0.17 TPSA 162.3 ✓ Ro5 ✓ Clean CCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C)COP(=O)(O…
SXM P0A6A8 444.4 Da LogP -1.16 TPSA 199.6 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCSC(=O)…
T7X Q6C7X2 887.1 Da LogP 9.17 TPSA 209.5 4 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC1[C@@…
UQ9 Q6C7X2 795.2 Da LogP 16.13 TPSA 52.6 2 viol. Alert CC1=C(C(=O)C(=C(C1=O)OC)OC)C\C=C(/C)\CC\C=C(/C)…
XLN P0A6A8 456.5 Da LogP 0.34 TPSA 162.3 ✓ Ro5 ✓ Clean CCC/C=C\S(=O)(=O)CCCNC(=O)CCNC(=O)[C@@H](C(C)(C…
ZMK Q0T5U2 514.5 Da LogP 0.49 TPSA 188.6 1 viol. ✓ Clean CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCSC(=O)…
ZMP Q6C7X2 568.7 Da LogP 4.07 TPSA 162.3 1 viol. ✓ Clean CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](C(C)(C…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.