Protein profile

KP13_03906

Short-chain dehydrogenase/reductase

Genome: KpKP13

Gene: AHE45348.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GMJ9
Amino acids 262
Annotations 1
Features 22
PDB binders 1
Druggability 0.88

Overview

Basic information about this protein and its source genome.

Accession
KP13_03906
Gene
AHE45348.1
Status
annotated
Amino acids
262
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
47.826
Human E-value
4.16e-07
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
95.18

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.88
Structure A0A0H3GMJ9
Pocket Pocket 13
P2Rank 0.925
Structure A0A0H3GMJ9
Pocket Pocket 1
ColabFold model
FPocket 0.984 · Pocket 6
P2Rank 0.922 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 17 / 4744 genomes with a hit
Normalized 0.004

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

22 records
Show feature table
Start End DB Term Name
1 262 PIRSF PIRSF000126 11-beta-HSD1
7 192 Pfam PF00106 short chain dehydrogenase
7 192 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
8 218 CDD cd05233 SDR_c
5 262 Gene3D G3DSA:3.40.50.720 -
5 232 PANTHER PTHR43086 VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE
81 92 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
81 92 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
128 144 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
128 144 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
175 192 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
175 192 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
7 24 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
7 24 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
154 173 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
154 173 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
81 92 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
134 142 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
134 142 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
154 173 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
6 232 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
6 232 InterPro IPR036291 NAD(P)-binding domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GMJ9
AlphaFold full sequence Viewing
ColabFold KP13_03906
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
13 0.88
8 0.287

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 21.43 0.87
2 1.13 0.009
3 1.1 0.008

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

151 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
MLH V5VHN7 417.3 Da LogP 4.34 TPSA 54.7 ✓ Ro5 ✓ Clean CCOC(=O)c1c2cc(c(cc2n(c1CN(C)C)c3ccccc3)Br)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.