Protein profile

KP13_03899

Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase

Genome: KpKP13

Gene: puuC AHE45355.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GL64
Amino acids 496
Annotations 3
Features 16
PDB binders 10
Druggability 0.507

Overview

Basic information about this protein and its source genome.

Accession
KP13_03899
Gene
puuC AHE45355.1
Status
annotated
Amino acids
496
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
54.348
Human E-value
1.09e-07
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
42.05
DEG E-value
1.31e-138
Localization
Cytoplasmic
ColabFold pLDDT
97.37

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.507
Structure A0A0H3GL64
Pocket Pocket 2
P2Rank 0.898
Structure A0A0H3GL64
Pocket Pocket 1
ColabFold model
FPocket 0.595 · Pocket 15
P2Rank 0.924 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 70 / 4744 genomes with a hit
Normalized 0.015

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0004030 Catalysis of the reaction: an aldehyde + NAD(P)+ + H2O = an acid + NAD(P)H + H+.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
24 489 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
24 489 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
271 459 FunFam G3DSA:3.40.309.10:FF:000012 Betaine aldehyde dehydrogenase
10 492 SUPERFAMILY SSF53720 ALDH-like
10 492 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
296 307 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
296 307 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
34 490 Pfam PF00171 Aldehyde dehydrogenase family
34 490 InterPro IPR015590 Aldehyde dehydrogenase domain
37 492 CDD cd07112 ALDH_GABALDH-PuuC
20 491 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED
267 274 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
267 274 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site
271 459 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
271 459 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
33 278 FunFam G3DSA:3.40.605.10:FF:000001 Aldehyde dehydrogenase 1

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GL64
AlphaFold full sequence Viewing
ColabFold KP13_03899
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.507
6 0.007
10 0.007
3 0.001

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 29.61 0.898
2 22.99 0.834
3 5.23 0.2
4 4.64 0.166
5 1.37 0.014

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

160 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2NO P05091 46.0 Da LogP 0.10 TPSA 49.3 ✓ Ro5 ✓ Clean N(=O)[O]
3AK P05091 237.3 Da LogP 2.42 TPSA 37.4 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2c3ccccc3C(=O)C2=O
6ZE P05091 270.3 Da LogP 4.42 TPSA 43.4 ✓ Ro5 ✓ Clean CCCC1=C(c2cc3c(c(oc3cc2OC1=O)C)C)C
BTB P05091 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO
BXB P05091 324.2 Da LogP 3.65 TPSA 47.6 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)C(=O)NCc2ccc3c(c2)OCO3)Cl
CRD P05091 70.1 Da LogP 0.76 TPSA 17.1 ✓ Ro5 ✓ Clean C\C=C\C=O
I3E P05091 162.2 Da LogP 2.84 TPSA 17.1 ✓ Ro5 ✓ Clean CCc1ccc(cc1)C(=O)CC
IAC Q88BC5 175.2 Da LogP 1.79 TPSA 53.1 ✓ Ro5 ✓ Clean c1ccc2c(c1)c(c[nH]2)CC(=O)O
TNG P05091 227.1 Da LogP -1.02 TPSA 157.1 ✓ Ro5 ✓ Clean C(C(CO[N+](=O)[O-])O[N+](=O)[O-])O[N+](=O)[O-]
TOE Q9HTP2 164.2 Da LogP -0.34 TPSA 47.9 ✓ Ro5 ✓ Clean COCCOCCOCCO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.