Protein profile

KP13_03895

putative transporter protein

Genome: KpKP13

Gene: AHE45360.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GL61
Amino acids 535
Annotations 4
Features 48
PDB binders 8
Druggability 0.893

Overview

Basic information about this protein and its source genome.

Accession
KP13_03895
Gene
AHE45360.1
Status
annotated
Amino acids
535
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
88.45

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.893
Structure A0A0H3GL61
Pocket Pocket 2
P2Rank 0.957
Structure A0A0H3GL61
Pocket Pocket 1
ColabFold model
FPocket 0.859 · Pocket 19
P2Rank 0.97 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 24 / 4744 genomes with a hit
Normalized 0.005

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0071705 The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Sequence Features

Domain/signature hits from InterPro and related databases.

48 records
Show feature table
Start End DB Term Name
38 46 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
31 37 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
494 535 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
226 248 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
191 214 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
215 225 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
447 469 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
258 275 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
404 426 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
344 363 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
473 493 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
56 499 NCBIfam TIGR00842 BCCT family transporter
56 499 InterPro IPR000060 BCCT transporter family
1 11 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
427 446 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
69 88 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
247 257 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
315 332 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
313 332 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
333 343 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
12 34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
191 213 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
44 66 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
12 30 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
474 496 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
4 509 PANTHER PTHR30047 HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
4 509 InterPro IPR000060 BCCT transporter family
1 37 Phobius SIGNAL_PEPTIDE Signal peptide region
276 314 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
364 402 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
47 68 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
344 363 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
226 246 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
447 467 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
312 321 ProSitePatterns PS01303 BCCT family of transporters signature.
312 321 InterPro IPR018093 BCCT transporter, conserved site
137 159 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
89 107 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
403 426 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
86 108 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
108 136 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
13 499 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter
13 499 InterPro IPR000060 BCCT transporter family
260 279 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
160 190 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
468 472 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 37 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
137 159 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GL61
AlphaFold full sequence Viewing
ColabFold KP13_03895
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.893
3 0.837
32 0.453

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 34.03 0.948
2 24.02 0.895
3 5.54 0.265
4 2.93 0.094
5 2.3 0.058

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

58 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
152 P31553 162.2 Da LogP -0.47 TPSA 57.5 ✓ Ro5 ✓ Clean C[N+](C)(C)C[C@@H](CC(=O)O)O
1Y8 P54582 165.1 Da LogP 1.32 TPSA 20.2 ✓ Ro5 ✓ Clean C[As](C)(C)CCO
BET P54582 118.2 Da LogP -0.22 TPSA 37.3 ✓ Ro5 ✓ Clean C[N+](C)(C)CC(=O)O
CHT P54582 104.2 Da LogP -0.32 TPSA 20.2 ✓ Ro5 ✓ Clean C[N+](C)(C)CCO
CM5 B4EY22 494.6 Da LogP -1.23 TPSA 178.5 2 viol. ✓ Clean C1CCC(CC1)CCCCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H]…
FLC P54582 189.1 Da LogP -5.25 TPSA 140.6 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(CC(=O)[O-])(C(=O)[O-])O
NM2 B4EY22 146.2 Da LogP 0.56 TPSA 37.3 ✓ Ro5 ✓ Clean C[N+](C)(C)CCCC(=O)O
PGT P54582 751.0 Da LogP 10.67 TPSA 148.8 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCC…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.