Protein target profile

KP13_04296

putative alpha-xylosidase

Genome: KpKP13 Gene: AHE45529.1 3D evidence: AlphaFold DB model + ColabFold model UniProt A0A0H3GUJ8
Length 787
Pocket druggability 0.342
Direct ligand evidence 0 54 total records
Functional annotation 0 EC 4 GO
Target summary

Target candidate with partial support; inspect missing evidence before prioritizing.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
30.074 Lower values reduce human off-target concern.
Human E-value
9.44e-80
Gut microbiome similarity
1.7% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
0.0 Higher values support similarity to known essential genes.

Localization

Localization
Unknown

Structure confidence

ColabFold pLDDT
97.32 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.342
Structure A0A0H3GUJ8
Pocket Pocket 6
P2Rank 0.849
Structure A0A0H3GUJ8
Pocket Pocket 1
ColabFold model
FPocket 0.424 · Pocket 17
P2Rank 0.473 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 79 / 4744 genomes with a hit
Prevalence 1.7%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Sequence

Primary amino-acid sequence viewer.

MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQLAQEGDTLTIATRQLRVTVHQPLWLEWSYRDEAGEWQRLANDRPTSAYLANAHGDGVAHYLSRRKDERFYGLGEKAGDLQRTGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAERGLFIRDSQTDAPERSSFWDDEGSHLDFTNPQTVAWWQEGVTTQLLEMGIDSTWNDNNEYEVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNIRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEAWMYPAITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDAQTFAECDDFLLGRDLLVASVVEPGARQREVWLPDNQAGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERISHVDAQKDDSRELQLFPLKGTGSTRGLLFEDDGESWGYKQGDALWLEWEMTCSASSINLDINARGNYRPAWKALKLSLPVGEKRKLLVNGVEGTEWRF

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0030246 Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
  • GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
  • GO:0004553 Catalysis of the hydrolysis of any O-glycosyl bond.
  • GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

20 records
Show feature table
Start End DB Term Name
245 599 Gene3D G3DSA:3.20.20.80 Glycosidases
2 243 SUPERFAMILY SSF74650 Galactose mutarotase-like
2 243 InterPro IPR011013 Galactose mutarotase-like domain superfamily
681 787 Gene3D G3DSA:2.60.40.1180 -
681 787 InterPro IPR013780 Glycosyl hydrolase, all-beta
146 741 PANTHER PTHR22762 ALPHA-GLUCOSIDASE
257 574 CDD cd06599 GH31_glycosidase_Aec37
146 213 Pfam PF13802 Galactose mutarotase-like
146 213 InterPro IPR025887 Glycoside hydrolase family 31, N-terminal domain
247 594 SUPERFAMILY SSF51445 (Trans)glycosidases
247 594 InterPro IPR017853 Glycoside hydrolase superfamily
3 242 Gene3D G3DSA:2.60.40.1760 glycosyl hydrolase (family 31)
238 681 Pfam PF01055 Glycosyl hydrolases family 31
238 681 InterPro IPR000322 Glycoside hydrolase family 31
701 765 Pfam PF17137 Domain of unknown function (DUF5110)
701 765 InterPro IPR033403 Domain of unknown function DUF5110
597 678 SUPERFAMILY SSF51011 Glycosyl hydrolase domain
141 257 CDD cd14752 GH31_N
600 680 Gene3D G3DSA:2.60.40.1180 -
600 680 InterPro IPR013780 Glycosyl hydrolase, all-beta

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #6
0.342
Likely same site as P2Rank 1 3.1 Å 15 shared residues 94% of smaller site
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Surrounding area
Site 2 FPocket #3
0.26
Likely same site as P2Rank 4 2.2 Å 9 shared residues 100% of smaller site
Unusual size
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Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.849
Likely same site as FPocket 6 3.1 Å 15 shared residues 94% of smaller site
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Surrounding area
Site 2 P2Rank #2
0.31
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Surrounding area
Site 3 P2Rank #3
0.189
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Surrounding area
Site 4 P2Rank #4
0.045
Likely same site as FPocket 3 2.2 Å 9 shared residues 100% of smaller site
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Surrounding area
Site 5 P2Rank #5
0.043
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Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GUJ8
AlphaFold DB full sequence Viewing
ColabFold KP13_04296
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

54 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 4 records from similar proteins
Structural ligands 1 0 loaded crystals
Measured bioactivity 3 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
NOJ PDB via homolog 163.2 Da · LogP -2.97 · TPSA 93.0 Open detail RCSB PDB
CHEMBL320116 ChEMBL via homolog · pchembl 7.66 (~21.9 nM) Detail ChEMBL
CHEMBL501355 ChEMBL via homolog · pchembl 6.47 (~338.8 nM) Detail ChEMBL
NBV ChEMBL via homolog Detail ChEMBL
ZINC11681341 ZINC proposed compound · Tanimoto 1.000 Detail ZINC

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
NOJ RCSB PDB G0SG42 163.2 Da LogP -2.97 TPSA 93.0 ✓ Ro5 ✓ Clean C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.