Protein profile

KP13_03013

putative Acriflavin resistance protein

Genome: KpKP13

Gene: AHE45604.1 Structure source: AlphaFold + ColabFold UniProt A0A6A8EG55
Amino acids 1021
Annotations 5
Features 73
PDB binders 10
Druggability 0.45

Overview

Basic information about this protein and its source genome.

Accession
KP13_03013
Gene
AHE45604.1
Status
annotated
Amino acids
1021
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
89.13

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.45
Structure A0A6A8EG55
Pocket Pocket 36
P2Rank 0.733
Structure A0A6A8EG55
Pocket Pocket 1
ColabFold model
FPocket 0.584 · Pocket 37
P2Rank 0.777 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 35 / 4744 genomes with a hit
Normalized 0.007

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.

Sequence Features

Domain/signature hits from InterPro and related databases.

73 records
Show feature table
Start End DB Term Name
940 959 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
908 912 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
40 135 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
796 1015 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
184 266 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
184 266 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
292 490 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
889 911 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
332 354 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
428 450 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
503 1009 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
913 939 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
488 527 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
383 387 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
711 801 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
711 801 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
464 487 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
336 354 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
361 382 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
715 790 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
715 790 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
355 360 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
361 383 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 1015 PANTHER PTHR32063 -
1 1015 InterPro IPR001036 Acriflavin resistance protein
393 415 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
528 548 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
10 34 PRINTS PR00702 Acriflavin resistance protein family signature
10 34 InterPro IPR001036 Acriflavin resistance protein
439 462 PRINTS PR00702 Acriflavin resistance protein family signature
439 462 InterPro IPR001036 Acriflavin resistance protein
464 487 PRINTS PR00702 Acriflavin resistance protein family signature
464 487 InterPro IPR001036 Acriflavin resistance protein
358 379 PRINTS PR00702 Acriflavin resistance protein family signature
358 379 InterPro IPR001036 Acriflavin resistance protein
38 56 PRINTS PR00702 Acriflavin resistance protein family signature
38 56 InterPro IPR001036 Acriflavin resistance protein
386 410 PRINTS PR00702 Acriflavin resistance protein family signature
386 410 InterPro IPR001036 Acriflavin resistance protein
915 934 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
549 861 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
12 33 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
4 1013 Pfam PF00873 AcrB/AcrD/AcrF family
4 1013 InterPro IPR001036 Acriflavin resistance protein
136 325 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
136 327 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
433 452 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
413 432 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
13 35 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
979 989 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
561 663 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
889 907 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
388 412 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
990 1012 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
960 978 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
939 959 Coils Coil Coil
883 888 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1013 1021 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
955 977 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
529 548 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
987 1009 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
180 274 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
180 274 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
863 882 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
559 629 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
453 463 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
40 809 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
664 863 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
10 502 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
465 487 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
862 882 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
34 335 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A6A8EG55
AlphaFold full sequence Viewing
ColabFold KP13_03013
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
36 0.45
46 0.318
31 0.308
1 0.216

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 17.91 0.81
2 7.84 0.416
3 6.72 0.342
4 6.35 0.319
5 5.96 0.293

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

60 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q2FD94 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
AIX Q5F725 351.4 Da LogP 0.26 TPSA 121.5 ✓ Ro5 ✓ Clean CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)[C@@H](c2…
AV0 P52002 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@H]1[C@@H]([C@H]([C…
ERY Q5F725 733.9 Da LogP 1.79 TPSA 193.9 2 viol. ✓ Clean CC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@](…
ET Q2FD70 314.4 Da LogP 4.13 TPSA 55.9 ✓ Ro5 Alert CC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N
LMT P52002 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
LMU Q9I6X4 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…
P9D P52002 693.8 Da LogP 0.91 TPSA 212.5 2 viol. ✓ Clean CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2…
PTY Q2FD70 734.1 Da LogP 11.67 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC…
YQM Q2FD94 558.6 Da LogP 0.14 TPSA 193.7 2 viol. ✓ Clean CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.